View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_18 (Length: 410)
Name: NF9201_low_18
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 12788347 - 12788711
Alignment:
| Q |
16 |
cattatcatattgtcaggcattgaaattaattcatcacgcttcggacttgttccattgatacagcatatccaacccaggaatcattactatgcactaaac |
115 |
Q |
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| T |
12788347 |
cattatcatattgttacgcattgaaattaattcatcacacttcggacttgttccattgatacagcatatccaacccaggaatcattactatg-------- |
12788438 |
T |
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| Q |
116 |
taaaaggatgatgctacatgtcaactaga-caggatggtcagaaaaatggtgcataattcaattcccaaatttcgaaaatgtattatcattgttgagaat |
214 |
Q |
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| T |
12788439 |
-------------ctacatgtcaactagagcaggatggtcaaaaaaatggtgcataattcaattcccaaatttcgaaaatgtattatcattgttgagaat |
12788525 |
T |
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| Q |
215 |
caatatgcaatttagttaggaaaatcatatatatccaactcagaaaatattactgtatgtaaaatgcaaatttacacatatcatattggtcaaaagttaa |
314 |
Q |
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| T |
12788526 |
caatatgcagtttagttaggaaaatcatatatatccaactcagaaaatattactgtatgtaaaacgcaaatttacacatattatattggtcaaaagttaa |
12788625 |
T |
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| Q |
315 |
agaaatctactgagaaacaaatacaagaaagagcaattagtatttggcattcccaatttcttctgctttctgtttgaacacgaaac |
400 |
Q |
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| T |
12788626 |
agaaatctactgagaaacaaatacaagaaagagcaattagtatttggcattcccaatttcttctgctttctgtttgaacacgaaac |
12788711 |
T |
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