View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_19 (Length: 397)
Name: NF9201_low_19
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 41765381 - 41765749
Alignment:
| Q |
16 |
cagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatcaa |
115 |
Q |
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| T |
41765381 |
cagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagagggattcaagccagtaaaagatgtatctattccagaaatcaa |
41765480 |
T |
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| Q |
116 |
tgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattagg |
215 |
Q |
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| T |
41765481 |
tgttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattagg |
41765580 |
T |
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| Q |
216 |
aatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagca |
315 |
Q |
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| T |
41765581 |
aatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagca |
41765680 |
T |
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| Q |
316 |
agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
384 |
Q |
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| T |
41765681 |
agttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41765749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 41757297 - 41757666
Alignment:
| Q |
15 |
tcagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagaggaattcaagccagtaaaagatgtatctattccagaaatca |
114 |
Q |
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| T |
41757297 |
tcagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaacca |
41757396 |
T |
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| Q |
115 |
atgttcgaaccggcataattgatgatcttcttggtggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattag |
214 |
Q |
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| T |
41757397 |
atcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttag |
41757496 |
T |
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| Q |
215 |
gaatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagc |
314 |
Q |
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| T |
41757497 |
gcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagc |
41757596 |
T |
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| Q |
315 |
aagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
384 |
Q |
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| T |
41757597 |
aagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41757666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
262 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
358 |
Q |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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