View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_20 (Length: 373)
Name: NF9201_low_20
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 6027575 - 6027919
Alignment:
| Q |
16 |
agaatgatgggaaagtaaaggattagaaatgggtagggacttgtctcattnnnnnnnn-gttgtgacattaatattatgtgacacaatttgcaaatatct |
114 |
Q |
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| T |
6027575 |
agaatgatgggaaagtaaaggattagaaatgggtagggacttgtctcattaaaaaaaaagttgtgacattaatattatgtgacacagttcgcaaatatct |
6027674 |
T |
|
| Q |
115 |
gaattatattcgatctt-gatcgatgcgtataagagtgtttaataaacataatgcaacgtagtttcaggcataatgcgatatagttttagataattagat |
213 |
Q |
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| T |
6027675 |
gaattatattcgatctttgatcgatgcgtataagagtgcctaataaacataatgcaacctagtttcaggtataatgcgacatagttttagataattagat |
6027774 |
T |
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| Q |
214 |
acttgtgtcatgtttgatggacaaacatgacctacaaagatgatataggtttgatcatcgataaagatgacctagatctgatcatcgagtaacaaactca |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
6027775 |
acttgtgtcatgtttgatcgacaaacatgacctacaaagatgatctaggtctgatcatcgataaagatgacctagatctgatcatcaaataacaaactca |
6027874 |
T |
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| Q |
314 |
cgttttgatccttaattgatgcatataaaagtgttagtcaacaatg |
359 |
Q |
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| T |
6027875 |
tgttttgatccttaattgatgcatataaaa-tgttagtcaacaatg |
6027919 |
T |
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