View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_30 (Length: 276)
Name: NF9201_low_30
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 8931717 - 8931805
Alignment:
| Q |
171 |
cacaagtattttatagtaaaggatcttctacggtttcctcaataaaactaattgaaccggtgacatcatcatcccataaagattcagta |
259 |
Q |
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| T |
8931717 |
cacaagtattttatagtaaaggatcttctacggtttcttcaataaaactaattgaaccggtgacatcatcatcccataaagattcagta |
8931805 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 8931563 - 8931657
Alignment:
| Q |
18 |
gcaactacctttctgtttattgcttagtatcacttggnnnnnnntggtttgtgctcactattggaagtgacaacaaattaagaaataacacatgc |
112 |
Q |
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| T |
8931563 |
gcaactacctttctgtttattgcttagtatcacttggaaaaaaatggtttgtgttcactattggaagtgacaacaaattaagaaataacacatgc |
8931657 |
T |
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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 8955464 - 8955556
Alignment:
| Q |
18 |
gcaactacctttctgtttattgcttagtatcacttggnnnnnnntggtttgtgctcactattggaagtgacaacaaattaagaaataacacat |
110 |
Q |
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| T |
8955464 |
gcaactacctttctgcttattgtttagtatcacttggaaaaaaatggtttgtgttcactattggaagtgacaacaaattaagaaataacacat |
8955556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 8955650 - 8955724
Alignment:
| Q |
182 |
tatagtaaaggatcttctacggtttcctcaataaaactaattgaaccggtgacatcatcatcccataaagattca |
256 |
Q |
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| T |
8955650 |
tatagtaaaggatcttcaacggtttcctcaagaaaactaattgaaccggtgacatcatcatccgaaaaagattca |
8955724 |
T |
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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 8920322 - 8920397
Alignment:
| Q |
181 |
ttatagtaaaggatcttctacggtttcctcaataaaactaattgaaccggtgacatcatcatcccataaagattca |
256 |
Q |
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| T |
8920322 |
ttatagtaaaggatcttctatagtctcctcgagataactaattgagccagtgacatcatcatcccataaagattca |
8920397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 8941644 - 8941718
Alignment:
| Q |
182 |
tatagtaaaggatcttctacggtttcctcaataaaactaattgaaccggtgacatcatcatcccataaagattca |
256 |
Q |
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| T |
8941644 |
tatagtaaaggatgctccatagtttcctcaagaaaactaattgagccggtgacatcatcatctgataatgattca |
8941718 |
T |
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