View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_6 (Length: 594)
Name: NF9201_low_6
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Complemental strand, 13340117 - 13339577
Alignment:
| Q |
12 |
tggtgtttgttctcactcactagattactatatactgtcattaatttttgtgtccaaacaacacaacttgtagaaatatatacagtacatgtcctaccca |
111 |
Q |
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| T |
13340117 |
tggtgtttgttctcactcactagattactatatactgtcattaatttttgtgtccaaacaacacaacttgtagaaatata----gtacatgtcctaccca |
13340022 |
T |
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| Q |
112 |
gtacccatagtattcattgtttatgagaaggatgcttttaggtgctggccgacaaaattttcatgttgtcagtggcagcaatttttcatgatctggagta |
211 |
Q |
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| T |
13340021 |
gtacccatggtattcattgtttatgagaaggatgcttttaggtgccggccgacaaaactttcatgtcgtcagtggcagcaatttttcatgatctggagta |
13339922 |
T |
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| Q |
212 |
caatattatattactgccaatctggcacagttattggtgctcctaattaatgttccctgccctatctacgatcaatggttttatttacatcctgtt-nnn |
310 |
Q |
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| T |
13339921 |
caatattatattactgccaatctggcacagttattggtgctcctaattaatgttccctgccctatctacgatcaatggttttatttacatcttgttaaaa |
13339822 |
T |
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| Q |
311 |
nnnnntctagtaagttttattacatgaaaggttgttatagccaccgcacaccatgcattaggaggga------agtgatgaccgaatgttatggactatg |
404 |
Q |
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| T |
13339821 |
aaaaatc---taagttttattacatgaaaggttgttatagccaccgcacaccatgcattacgagggaagtgatagtgatgaccaaaggctatggactatg |
13339725 |
T |
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| Q |
405 |
gtgtaattttctcataaagaaaaggttatggtgttattgataatgaaaggttgttgaagagagaaaggtactataggaatcaatcacatgggtgaaccat |
504 |
Q |
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| T |
13339724 |
gtgtaatttgctcataaagaaaaggttatggtgttattgataatgaaaggttgttgaagagagaaaggtactataggaatcaatcacatgggtgaaccat |
13339625 |
T |
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| Q |
505 |
cttatggttttcttggaaggagatttaatcagaggaagaacttgtttt |
552 |
Q |
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| T |
13339624 |
gttatggttttcttggaaggagatttaatcagaggaagaacttgtttt |
13339577 |
T |
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