View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_7 (Length: 585)
Name: NF9201_low_7
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 106 - 581
Target Start/End: Original strand, 9212720 - 9213195
Alignment:
| Q |
106 |
actcacaactgacctaatttcatgagaatggctgatctaattagactctcttccttgctcatctcattaggaattcgaacaacaacatcttgtaccataa |
205 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9212720 |
actcactactgacctaatttcatgagaatggcggatctaattaaactctcttccttgttcatctcattaggaattcgaacaacaacatcttgaaccataa |
9212819 |
T |
|
| Q |
206 |
cttcattaacggtcgatatactagcatgttgtacctgaaacttcaaatccttcaatacactcattaatcttgaactagggtaattaacattctcacattt |
305 |
Q |
| |
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|||||||||| ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| || |
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| T |
9212820 |
cttcattaacagtcgatatactagcatgatgcacctgaaactccaaatccttcaatacactcattaatcttgcaccagggtgattaacattctcactttg |
9212919 |
T |
|
| Q |
306 |
aactctcaccatagcatcatttcctattatcttcgcatcaatctccaaagcattaaccttacaaggacatttttggtctaacacggttgaaattgttgtt |
405 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||||||||| || |||||||| |||||||| | ||||||||||| ||| |||||| |||| ||| |
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| T |
9212920 |
tactctcaccatagcatcatttcctataatcttcacatcaatctcaaacgcattaacattacaaggtcttttttggtctaccacagttgaagttgtcgtt |
9213019 |
T |
|
| Q |
406 |
gcactgttattatcgacaatttctatcgttaccatgttcacctttttcgattccttttgttgcccaaattttaaatcttcaatctttgcttttaactcat |
505 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| |
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| T |
9213020 |
gcactgttattatcgacaatttccatcgtttccatcttcacctttttcgattccttttgttgcactgattctaaatcttcaatctttgattttaactcat |
9213119 |
T |
|
| Q |
506 |
tgatgtaatccactgcatctgataacaaagaagctttatccatctttgaaatgtttggaaccacagatcttaaagc |
581 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9213120 |
tgatgtaatccactgcatctgataaaagagaagctttatccatctttgaaacatttggaaccacagatcttaaagc |
9213195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 120 - 585
Target Start/End: Complemental strand, 9195308 - 9194831
Alignment:
| Q |
120 |
taatttcatgagaatggctgatctaattagactctcttccttgctcatctcattaggaattcgaacaacaacatcttgtaccat---aacttcattaacg |
216 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||| || |||||||||||||||| | ||||| ||||||||| ||||| ||||| ||||||| |
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|
| T |
9195308 |
taatttcatgagaattgcagacctaattaggctctcttcatttctcatctcattaggaactttaacaataacatcttgaaccattacaactttattaacg |
9195209 |
T |
|
| Q |
217 |
gtcgatatactagcatgttgtacctgaaacttcaaatccttcaatacactcattaatcttgaactagggtaattaacattctcacatttaactctcacca |
316 |
Q |
| |
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|||||||||||||| || ||||||||| ||| |||||| |||||||||||||||||||||| |||||||| |||||||||| || || ||||||||||| |
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| T |
9195208 |
gtcgatatactagcctgatgtacctgatactccaaatctttcaatacactcattaatcttgcactagggtgattaacattcaaactttgaactctcacca |
9195109 |
T |
|
| Q |
317 |
tagcatcatttcctattatcttcgcatcaatctccaaagcattaacctt---------acaaggacatttttggtctaacacggttgaaattgttgttgc |
407 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||| |||||| ||| || || ||| |||||||||| ||| ||||| |||| ||||| |
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| T |
9195108 |
tagcatcatgtcctatgatcttcacatcaatctctaaagcaataagattcttactacaactaggtttgttttggtctaccacaattgaagttgtcgttgc |
9195009 |
T |
|
| Q |
408 |
actgttattatcgacaatttctatcgttaccatgttcacctttttcgattccttttgttgcccaaattttaaatcttcaatctttgcttttaactcattg |
507 |
Q |
| |
|
||| |||||||||||||||| |||||| ||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
9195008 |
actattattatcgacaattttcatcgttttcatcatcgcctttttcgattccttttgttgccctaattttaaatcttcgatctttgcttttaactcattg |
9194909 |
T |
|
| Q |
508 |
atgtaatccactgcatctgataacaaagaagctttatccatctttgaaatgtttggaaccacagatcttaaagcatag |
585 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9194908 |
atgtaatctactgcatcagataacaaagaagctttatccatctttgaaacgtttggaaccacagatcttaaagcatag |
9194831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 9235013 - 9235316
Alignment:
| Q |
1 |
cgatactatgaatggtaaaagccattggtttgtatgagatgacacaagnnnnnnncgggtggcaattaaactcttatagcttttgaagatttgggttgnn |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9235013 |
cgatactatgaatggcaaaagccattggtttgtatgagatgagacaagtctttt-cggatggcaattaaactcttatagcttttgaagatttgggttgtt |
9235111 |
T |
|
| Q |
101 |
nnnnn-actcacaactgacctaatttcatgagaatggctgatctaattagactctcttccttgctcatctcattaggaattcgaacaacaacatcttgta |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
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|
| T |
9235112 |
ttttttactcacaactgacctaatttcatgagaatggctgatctaattagactctcttcattgctcatctcattaggaattcgaacaacaacaccttgaa |
9235211 |
T |
|
| Q |
200 |
ccataacttcattaacggtcgatatactagcatgttgtacctgaaacttcaaatccttcaatacactcattaatcttgaactagggtaattaacattctc |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
9235212 |
ccataacttcattaacagtcgatatactagcatgttgtacctgaaacttcaaatccttcaatacactcattaatcttgcactagggtaattaacattctc |
9235311 |
T |
|
| Q |
300 |
acatt |
304 |
Q |
| |
|
||||| |
|
|
| T |
9235312 |
acatt |
9235316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 17371053 - 17370995
Alignment:
| Q |
459 |
cttttgttgcccaaattttaaatcttcaatctttgcttttaactcattgatgtaatcca |
517 |
Q |
| |
|
|||||||||| | |||| ||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
17371053 |
cttttgttgcactaattctaaattttcaatctttgctttcaactcattgatgtaatcca |
17370995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 516
Target Start/End: Complemental strand, 24748802 - 24748745
Alignment:
| Q |
459 |
cttttgttgcccaaattttaaatcttcaatctttgcttttaactcattgatgtaatcc |
516 |
Q |
| |
|
|||||||||| | ||| ||||| ||||||||||||||| ||||||| |||||||||| |
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|
| T |
24748802 |
cttttgttgcactgattctaaattttcaatctttgctttcaactcatagatgtaatcc |
24748745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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