View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9202_low_1 (Length: 441)

Name: NF9202_low_1
Description: NF9202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9202_low_1
NF9202_low_1
[»] chr7 (10 HSPs)
chr7 (17-410)||(39577095-39577488)
chr7 (123-410)||(39591678-39591965)
chr7 (123-424)||(39567394-39567695)
chr7 (188-424)||(39346169-39346405)
chr7 (123-420)||(39541343-39541640)
chr7 (123-424)||(39550601-39550902)
chr7 (188-424)||(39334911-39335147)
chr7 (188-424)||(39360720-39360956)
chr7 (115-404)||(39624155-39624444)
chr7 (251-305)||(38390680-38390734)
[»] chr8 (2 HSPs)
chr8 (115-309)||(28940952-28941146)
chr8 (342-402)||(4497929-4497989)
[»] chr4 (3 HSPs)
chr4 (124-424)||(2900481-2900781)
chr4 (161-424)||(2874189-2874452)
chr4 (161-401)||(2884206-2884446)
[»] chr1 (1 HSPs)
chr1 (352-399)||(2163908-2163955)
[»] chr3 (1 HSPs)
chr3 (352-399)||(49770236-49770283)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 39577095 - 39577488
Alignment:
Q  17 caatattgttgttgatctttcattgatgtcacctaaagcataatgggcaaaattaaatagttaaaattcactcgtccatatagattgtagaaagaagtta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577095 caatattgttgttgatctttcattgatgtcacctaaagcataatgggcaaaattaaatagttaaaattcactcgtccatatagattgtagaaagaagtta 39577194  T
Q  117 aatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577195 aatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggacc 39577294  T
Q  217 ctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattg 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577295 ctggtacacaatgtgcccctcagagagtagaataatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattg 39577394  T
Q  317 agcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  39577395 agcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttag 39577488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 123 - 410
Target Start/End: Original strand, 39591678 - 39591965
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| ||||||||||||||||||||||| | ||| ||  || | ||  ||||||| | |||||||||||| || ||||| || ||||| ||||| || ||    
T  39591678 cactcacttcttgtaaaaagtctgccacagctttcctcgcatggcatatgaaacccattgaagcaaaaaaatcgagcacatgctcacagggaccttgata 39591777  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
    |||||| |||||||||||||||||||| |||||||| |||||||  |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||     
T  39591778 cacaatatgcccctcagagagtagaataatgtcgtcgaaaagatagtaagtctcaggtggtggctgcaagagtgagattacagcagttcctttgagaaga 39591877  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttag 410  Q
    |||||||| ||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||    
T  39591878 tggacataatgcatcactgatctcacaacttgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaaaagagccttag 39591965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 123 - 424
Target Start/End: Original strand, 39567394 - 39567695
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| |||||||| || || |||||||||  ||| || || ||||| || ||||| | |||  ||||||||||||| |||||||| |  ||||| |||||    
T  39567394 cactcacttcttgcaagaaatctgccactcctttcctatctggacatttaaaaccgattgattcaaaaaattcaagtacgtgttcccggggaccttggta 39567493  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
     | |||| | |  |||||||||||||| | ||||||||||||||  |||||||||||||||||||||| ||||||||| |  || ||||||||||| | |    
T  39567494 tataatgcgactatcagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatg 39567593  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaacca 422  Q
    |||||||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39567594 tggacatcttgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaacca 39567693  T
Q  423 ac 424  Q
    ||    
T  39567694 ac 39567695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 188 - 424
Target Start/End: Complemental strand, 39346405 - 39346169
Alignment:
Q  188 aaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggct 287  Q
    |||||||||||||||||||| | |||||| ||||| | |||||| |  |||||||||||||| |||||||| || ||||  ||||| |||||||| ||||    
T  39346405 aaaaattcaagcacgtgttcccgaggaccttggtatataatgtgactatcagagagtagaataatgtcgtcgaatagattgtaagtttctggtggcggct 39346306  T
Q  288 gcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatat 387  Q
    ||| |||||||||||| || ||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39346305 gcaggagtgagatcaccgcggttcctttgagaatgtggacatattgcttcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatat 39346206  T
Q  388 ttcgtccatgaatagagctttagtgggtccaaccaac 424  Q
    ||| |||||||||| ||||||||| ||||||||||||    
T  39346205 ttcatccatgaataaagctttagttggtccaaccaac 39346169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 123 - 420
Target Start/End: Original strand, 39541343 - 39541640
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| |||||||| ||||| |||||||||  ||| || |||||||| || ||||| | |||  | ||||||||||||||||| ||||  ||||| |||||    
T  39541343 cactcacttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccgattgattcgaaaaattcaagcacgtgctcacggggaccttggta 39541442  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
     | |||||| |  |||||||||||||| || || ||||||||||   | ||||||||||||||||| | ||||||||| ||||| ||||| ||||| | |    
T  39541443 tataatgtgactatcagagagtagaataatttcatcaaaaagattgaatgtctctggtggtggctgaaggagtgagatgacagccgttcctttgagaatg 39541542  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaac 420  Q
    || ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  39541543 tgtacatactgctttattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaatagagctttagtcggtccaac 39541640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 123 - 424
Target Start/End: Original strand, 39550601 - 39550902
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| |||||||| ||||| |||||||||  ||| || |||||||| || ||||| | |||  | ||||||||||||||||| ||||  ||||| |||||    
T  39550601 cactcacttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggta 39550700  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
     | |||||| |  |||||||||||||| ||||||||||||||||  |||||||||||||||||||| | ||| ||||| || |||||||| ||||| | |    
T  39550701 tataatgtgactatcagagagtagaataatgtcgtcaaaaagattgtaagtctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatg 39550800  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaacca 422  Q
    |||||| | ||||||||||| |||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||    
T  39550801 tggacaaattgcttcattgaattcacaatctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaacca 39550900  T
Q  423 ac 424  Q
    ||    
T  39550901 ac 39550902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 188 - 424
Target Start/End: Complemental strand, 39335147 - 39334911
Alignment:
Q  188 aaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggct 287  Q
    |||||||||||||||||||| | |||||| ||||| | ||| || |  |||||||||||||| |||  |||||| ||||  ||||| |||||||| ||||    
T  39335147 aaaaattcaagcacgtgttcccgaggaccttggtatataatatgactatcagagagtagaataatgctgtcaaatagattgtaagtttctggtggcggct 39335048  T
Q  288 gcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatat 387  Q
    ||| |||||||||||| || ||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39335047 gcaggagtgagatcaccgcggttcctttgagaatgtggacatattgcttcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatat 39334948  T
Q  388 ttcgtccatgaatagagctttagtgggtccaaccaac 424  Q
    ||| |||||||||| ||||||||| ||||||||||||    
T  39334947 ttcatccatgaataaagctttagttggtccaaccaac 39334911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 188 - 424
Target Start/End: Complemental strand, 39360956 - 39360720
Alignment:
Q  188 aaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggct 287  Q
    |||||||||||||||||||| |  ||||| ||||| | |||||| |  ||||||||||| || ||||||||||||||||  |||||||||||||| ||||    
T  39360956 aaaaattcaagcacgtgttcccggggaccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaagattgtaagtctctggtggaggct 39360857  T
Q  288 gcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatat 387  Q
    ||| ||||||||||||  | ||||| ||||| | ||| ||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39360856 gcaggagtgagatcaccacggttcctttgagaatgtgaacatattgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatat 39360757  T
Q  388 ttcgtccatgaatagagctttagtgggtccaaccaac 424  Q
    ||| |||||||||| ||||||||| ||||||||||||    
T  39360756 ttcatccatgaataaagctttagtcggtccaaccaac 39360720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 115 - 404
Target Start/End: Original strand, 39624155 - 39624444
Alignment:
Q  115 taaatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaagga 214  Q
    ||||||| ||||||||||||||||||||||| |||||| ||| || ||||||||| | ||||||| |||||||||||| |||||||| ||| ||||||||    
T  39624155 taaatttgcacttacttcttgtaaaaagtctaccactggtttcctctcaggacacataaaacctattgaagcaaaaaaatcaagcacttgtacacaagga 39624254  T
Q  215 ccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccat 314  Q
    || |||||||||||||| || || ||||||| ||| ||||| ||||||||||  ||||||||| ||| ||||||    |||||||||||||||||||  |    
T  39624255 ccttggtacacaatgtgtccatcggagagtaaaataatgtcatcaaaaagattgtaagtctctagtgatggctgttgtagtgagatcacagcagttcttt 39624354  T
Q  315 tgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagag 404  Q
    |||| |||| |||| | || ||||  |||||||||| |||||| | |||||||  |||||||||| ||||||| || |||| ||||||||    
T  39624355 tgagaaggtagacaaattgtttcagcgatttcacaatttgaaaggctgttgagtcatccaaaccaatagatatatcatccacgaatagag 39624444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 38390734 - 38390680
Alignment:
Q  251 atgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacag 305  Q
    ||||| |||||||| | ||| |||||  |||||||||||||||||||||||||||    
T  38390734 atgtcatcaaaaagcttataggtctccagtggtggctgcaagagtgagatcacag 38390680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 28940952 - 28941146
Alignment:
Q  115 taaatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaagga 214  Q
    ||||||| |||||||||| |||||||||||| |||||| ||| ||||| |||||| | ||||| | |||||| ||||| ||| |||| | | ||||||||    
T  28940952 taaatttgcacttacttcctgtaaaaagtctaccactggtttcctttcgggacacataaaacccattgaagccaaaaaatcaggcacttatacacaagga 28941051  T
Q  215 ccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagt 309  Q
    || |||||||||||||| || |||||||||| ||| ||||| | ||||||||  ||||||||| ||| ||||||    ||||| |||||||||||    
T  28941052 ccttggtacacaatgtgtccatcagagagtaaaataatgtcataaaaaagatagtaagtctctagtgatggctgttgtagtgatatcacagcagt 28941146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 402
Target Start/End: Complemental strand, 4497989 - 4497929
Alignment:
Q  342 atttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatag 402  Q
    ||||||||| |||||| |||||||| ||||| | |||||| |||||||| |||||||||||    
T  4497989 atttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaatag 4497929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 424
Target Start/End: Original strand, 2900481 - 2900781
Alignment:
Q  124 acttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtac 223  Q
    |||||||||||| | |||||| || ||   ||| || |||||||| |||||||| | |||  ||||||| ||||| || |||||||  || || || ||     
T  2900481 acttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatag 2900580  T
Q  224 acaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggt 323  Q
    ||||| || || || || |  ||||| ||||| |||||||| |||||||||||||||| ||| || |  |  ||||| || ||||||||||| || |  |    
T  2900581 acaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatat 2900680  T
Q  324 ggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaa 423  Q
    | ||||| ||| | |  |||||||||| ||| |||||||| || || ||||| |||||||||||||| |||||||||| ||| || |  |||||||||||    
T  2900681 gaacatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaataaagcatttgctggtccaaccaa 2900780  T
Q  424 c 424  Q
    |    
T  2900781 c 2900781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 424
Target Start/End: Complemental strand, 2874452 - 2874189
Alignment:
Q  161 tcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaa 260  Q
    |||||||| |||||||| |  ||  ||||||||||||| || | ||||| ||| || ||||| ||||| |  || ||||| |  ||||| ||||| ||||    
T  2874452 tcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaa 2874353  T
Q  261 aaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagt 360  Q
    |||| |||||||||||||||| |||||| |  | |||||| |  ||||||||||  || |  |  ||||| ||| | |  |||||||||| ||||||||     
T  2874352 aaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagc 2874253  T
Q  361 tgttgagctatccaaaccagtagatatttcgtccatgaatagagctttagtgggtccaaccaac 424  Q
    ||| || ||||| || ||||| |||||||| |||||||||||| |||| |  ||||||||||||    
T  2874252 tgtggaactatctaagccagttgatatttcatccatgaatagaactttcgatggtccaaccaac 2874189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 401
Target Start/End: Complemental strand, 2884446 - 2884206
Alignment:
Q  161 tcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaa 260  Q
    |||||||| |||||||| | |||  ||||||||||||| |  ||||| | ||| || ||||| ||||| || || ||||| |  ||||| ||||| ||||    
T  2884446 tcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaa 2884347  T
Q  261 aaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagt 360  Q
    |||| ||||||||||| |||| ||| || |  |  ||||| || |  |||||||| || | ||| ||||| ||||  |  ||| |||||| ||| |||||    
T  2884346 aaagttcataagtctcaggtgctggttggagtaaagagataactgtggttccattaagaatgtgaacatattgctgaagagatctcacaatttggaaagt 2884247  T
Q  361 tgttgagctatccaaaccagtagatatttcgtccatgaata 401  Q
    ||| || || |||||||||||||||||||| ||||||||||    
T  2884246 tgtggaactgtccaaaccagtagatatttcatccatgaata 2884206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 2163908 - 2163955
Alignment:
Q  352 ttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaa 399  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||||    
T  2163908 ttgaaaagttgttgaactgtccaaaccagttgatatttcgtccatgaa 2163955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 49770283 - 49770236
Alignment:
Q  352 ttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaa 399  Q
    |||||| |||||||| || ||||||||||| |||||||||||||||||    
T  49770283 ttgaaatgttgttgaactgtccaaaccagtcgatatttcgtccatgaa 49770236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University