View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9202_low_3 (Length: 402)
Name: NF9202_low_3
Description: NF9202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9202_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 49654212 - 49653887
Alignment:
| Q |
1 |
tggagtcctttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttcc |
100 |
Q |
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| T |
49654212 |
tggagtcctttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttcc |
49654113 |
T |
|
| Q |
101 |
ggtgactgttactttattctgttgtggatcgattgttgttgtaaaaactcctgcattgcaaatgttatgaaacaccccaaaattttgtcaccgtaacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654112 |
ggtgactgttactttattctgttgtggatcgattgttgttgtaaaaactcctgcattgcaaatgttatgaaacaccccaaaattttgtcaccgtaacaac |
49654013 |
T |
|
| Q |
201 |
acaaaaatggttaattaataagaatcacatacagaaacacgaatacaagacgcaacacaaacactgtcactgaccgcatttaaaaaatagaagtagtatt |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49654012 |
acaaaaatggttaattaataagaatcaaatacagaaacacgaatacaagacacaacacaaacactgtcactgaccgcatttaaaaaat--aagtagtatt |
49653915 |
T |
|
| Q |
301 |
tcaatttaatcacatgtatgtgttgtgt |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
49653914 |
tcaatttaatcacatgtatgtgttgtgt |
49653887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 6224763 - 6224678
Alignment:
| Q |
10 |
ttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaaca |
95 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
6224763 |
ttactttcccaggaagattctctggcaaaacctcggcgtgatttccagctttggcaagtttccttatcaaagtctcaagagcaaca |
6224678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 14381849 - 14381964
Alignment:
| Q |
23 |
aagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttccggtgactgttactttattctgt |
122 |
Q |
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||||||||||||| ||| ||| |||| |||||||||||| | || ||||||| || ||||| | | |||||||||| || ||||||||||| | ||| |
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| T |
14381849 |
aagattctccggccaaatctcagcgtactttccagctttgaccagcttccttaaaagggtctcaacaccaacatttccagttactgttactttttgttgt |
14381948 |
T |
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| Q |
123 |
tgtggatcgattgttg |
138 |
Q |
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|||| ||| ||||||| |
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| T |
14381949 |
tgtgaatcaattgttg |
14381964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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