View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9202_low_5 (Length: 321)
Name: NF9202_low_5
Description: NF9202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9202_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 40427169 - 40426887
Alignment:
| Q |
19 |
ttctcagcatccccacaagagagtacttattcctctcataccaacatcaacaacaagcgaatccattccgaaagcacacagaacagttctttccctactc |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40427169 |
ttctcagaatccccacaagagagtacttattcctctcataccaacatcaacaacaagcgaatccattccgaaagcacacagaacagttctttccctactc |
40427070 |
T |
|
| Q |
119 |
aaagtccagatcaatctgttgcctcagcaacaccaccaactaaattactcaaggcttctcccaaaatcatttcatttgattattcgaataatgattcaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40427069 |
aaagtccagatcaatctgttgcctcagcaacaccaccaactaaactactcaaggcttctcccaaaatcatttcatttgattactcgaataatgattcaaa |
40426970 |
T |
|
| Q |
219 |
ggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgactatgataaac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40426969 |
ggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattattataaac |
40426887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 40442257 - 40441975
Alignment:
| Q |
19 |
ttctcagcatccccacaagagagtacttattcctctcataccaacatcaacaacaagcgaatccattccgaaagcacacagaacagttctttccctactc |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442257 |
ttctcagaatccccacaagagagtacttattcctctcataccaacatcaacaacaagcgaatccattccgaaagcacacagaacagttctttccctactc |
40442158 |
T |
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| Q |
119 |
aaagtccagatcaatctgttgcctcagcaacaccaccaactaaattactcaaggcttctcccaaaatcatttcatttgattattcgaataatgattcaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40442157 |
aaagtccagatcaatctgttgcctcagcaacaccaccaactaaactactcaaggcttctcccaaaatcatttcatttgattactcgaataatgattcaaa |
40442058 |
T |
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| Q |
219 |
ggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgactatgataaac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40442057 |
ggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattattataaac |
40441975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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