View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9203_low_11 (Length: 412)
Name: NF9203_low_11
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 21189515 - 21189110
Alignment:
| Q |
1 |
atccttcctggagatagagttagagttgaagttagtcgatatgattcctccaaaggacgcatcgtttataggcttcgtaatactcctggtggtggctctt |
100 |
Q |
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| T |
21189515 |
atccttcctggagatagagttagagttgaagttagtcgatatgattcctccaaaggacgcatcgtttataggcttcgtaatactcctggtggtggctctt |
21189416 |
T |
|
| Q |
101 |
cttagtttttaatgcatttgtagtgtttgtgaaaatgactcaaaggaatgtgtgcgagtttcggatagataattgggtttgtttaatttatggggttagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21189415 |
cttagtttttaatgcatttgtagtgtttgtgaaaatggctcaaaggaatgtgtgcgagtttcggatagataattgggtttgtttaatttatggggttagt |
21189316 |
T |
|
| Q |
201 |
ggaaagggaaactttgtannnnnnnnnnnnnaatttcaacattccttggatataaagattcaacttcaagtatatggttgttgtagaaagaagcaaaaac |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21189315 |
ggaaagggaaactttgtattttttgttttttaatttcaacattccttggatataaagattcaacttcaagtatatggttgttgtagaaagaagcaaaaac |
21189216 |
T |
|
| Q |
301 |
caaatatatgatttgttctctgattttgcactacttatttcggtttcatattttatgtaacattcattttcatcattgaaaattaacatttgaaatgaac |
400 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |
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| T |
21189215 |
caaatatgtgctttgttctctgattttgcactacttatttcggtttcatattttatatagcattcattttcattattgaaaattaacatttgaaatgaac |
21189116 |
T |
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| Q |
401 |
accaaa |
406 |
Q |
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|||||| |
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| T |
21189115 |
accaaa |
21189110 |
T |
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