View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9203_low_12 (Length: 369)
Name: NF9203_low_12
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 11593947 - 11593779
Alignment:
| Q |
14 |
tttggtgtttgacatttacttacttattttggggtgctattttactctaatcacatggaatgatttggtagttgttaatttagaattggtttcaacaaaa |
113 |
Q |
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| T |
11593947 |
tttggtgtttgacatttacttacttattttggggtgctattttactctaatcacatggaatgatttggtagttgttagtttagaattggtttcaacaaaa |
11593848 |
T |
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| Q |
114 |
tgctatagt-aaatatcacaaataatcatgattcgatgttgtaacattgtaccatgaaccggtatcgtt |
181 |
Q |
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| T |
11593847 |
tgctatagtaaaatatcacaaataatcatgattccatgtcgtaacattgtaccatgaaccggtatcgtt |
11593779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 209 - 351
Target Start/End: Complemental strand, 11593781 - 11593639
Alignment:
| Q |
209 |
gttgttgcctattggaactcggtgtaactaattactctagttaaaatgctattgcttgagatcaagaaactatagtttgcagtcaaaaacataatctagg |
308 |
Q |
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| T |
11593781 |
gttgttgcctattggaactcgttgtaaccaattactcaagttcaaatgctattgcttgagatcaagaaactatagtttgcagtcaaaaacataatctagg |
11593682 |
T |
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| Q |
309 |
aacatattcgaacgtgacctgattattagattaggttggattg |
351 |
Q |
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| T |
11593681 |
aacatattcgaacgtgacctgattattagattaggttggattg |
11593639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 37083961 - 37084016
Alignment:
| Q |
15 |
ttggtgtttgacatttacttacttattttggggtgctattttactctaatcacatg |
70 |
Q |
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| T |
37083961 |
ttggtgtttgacatttacttacttattttggggtgctattttactctaatcacatg |
37084016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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