View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9203_low_13 (Length: 327)
Name: NF9203_low_13
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 28183799 - 28184114
Alignment:
| Q |
1 |
ttccttaatcttgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaat |
100 |
Q |
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| T |
28183799 |
ttccttaatcttgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaat |
28183898 |
T |
|
| Q |
101 |
gttgcaatcttttggaagattgatgtgttcgaattcttctctccttcggcattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaag |
200 |
Q |
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| T |
28183899 |
gttgcaatcttttggaagattgatgtgttcgaattcttctctccttcggtattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaag |
28183998 |
T |
|
| Q |
201 |
ggtatgtagctaggcaaggatcatcagcataggcaaacacatactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttc |
300 |
Q |
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| T |
28183999 |
ggtatgtagctaggcaaggatcatcagcataggcaaacacatactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttc |
28184098 |
T |
|
| Q |
301 |
tccattgacacaggtt |
316 |
Q |
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||||||||||| |||| |
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| T |
28184099 |
tccattgacaccggtt |
28184114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 306
Target Start/End: Complemental strand, 40945583 - 40945315
Alignment:
| Q |
38 |
tcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattct |
137 |
Q |
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| T |
40945583 |
tcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattct |
40945484 |
T |
|
| Q |
138 |
tctctccttcggcattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaa |
237 |
Q |
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| T |
40945483 |
tctcactctctccattaactaatgcatgatctaccaacacttgcctgagtttttgactcaatgggtatgtagcactacaaggatcatcaatataagcaaa |
40945384 |
T |
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| Q |
238 |
cacatactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccatt |
306 |
Q |
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|||| ||| || || || ||||| | || ||||| || ||||||||||||||||||||||||||||| |
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| T |
40945383 |
tacatgctctctatcaaccactttcaataagtctttttcacaaaatcttgaaggatgaagttctccatt |
40945315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 306
Target Start/End: Complemental strand, 40959548 - 40959280
Alignment:
| Q |
38 |
tcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatcttttggaagattgatgtgttcgaattct |
137 |
Q |
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|||||||| ||||||||||||||||| || |||||||||| |||||| || |||||||| |||||||||||||| |||||||| |||||| |||||| |
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| T |
40959548 |
tcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgttcaaattct |
40959449 |
T |
|
| Q |
138 |
tctctccttcggcattcactaatgcatgatccacaagcacttgtctcaacttttgcatcaaagggtatgtagctaggcaaggatcatcagcataggcaaa |
237 |
Q |
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|||| | || |||| |||||||||||||| || | |||||| || | ||||| |||| ||||||||||| |||||||||||| ||| ||||| |
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| T |
40959448 |
tctcactctctccattaactaatgcatgatctaccaacacttgcctgagtttttgactcaatgggtatgtagcactacaaggatcatcaatataagcaaa |
40959349 |
T |
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| Q |
238 |
cacatactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccatt |
306 |
Q |
| |
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|||| ||| || || || ||||| | || ||||| || || ||||||||||| |||||||||||||| |
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| T |
40959348 |
tacatgctctctatcaaccactttcaataagtctttttcacataatcttgaaggttgaagttctccatt |
40959280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 43217319 - 43217269
Alignment:
| Q |
49 |
ccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaa |
99 |
Q |
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||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
43217319 |
ccttgcactttcaacttcctttggcaaaagagacttcaattcatcctcaaa |
43217269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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