View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9203_low_14 (Length: 302)
Name: NF9203_low_14
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 71 - 288
Target Start/End: Original strand, 12150285 - 12150502
Alignment:
| Q |
71 |
tcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactttgatcatcatttctctgcaaccaataattgatagtacatttt |
170 |
Q |
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| T |
12150285 |
tcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactctgatcatcatttctctgcaaccaataattgatagtacatttt |
12150384 |
T |
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| Q |
171 |
aatagggagaaaaatatgcataaaactttgaagaaacataatatagaaaaagagattatatagccttattacctctggtgtaaatgtgagagccacctta |
270 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||| |
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| T |
12150385 |
aatagggagaaaaatatgcataaaactttgaagaaaaataatatagaaaaagagattatattgccttattacctcaggtgtaaaagtgagagcaacctta |
12150484 |
T |
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| Q |
271 |
atctctccacaatattct |
288 |
Q |
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|||||||||||||||||| |
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| T |
12150485 |
atctctccacaatattct |
12150502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 71 - 286
Target Start/End: Original strand, 12143302 - 12143515
Alignment:
| Q |
71 |
tcaaaagtcactagctgattctttccatccaccagtctcctcctcttcattgtaactttgatcatcatttctctgcaaccaataattgatagtacatttt |
170 |
Q |
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||||||||| ||||| |||| ||||||||| || ||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||||||||| |
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| T |
12143302 |
tcaaaagtccctagccgattgtttccatcctccggtctcctcctcttgattgtaactccgttcgtagtttctctgcaaccaataattgatagtacatttt |
12143401 |
T |
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| Q |
171 |
aatagggagaaaaatatgcataaaactttgaagaaacataatatagaaaaagagattatatagccttattacctctggtgtaaatgtgagagccacctta |
270 |
Q |
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| T |
12143402 |
aatagggagaaaaatatgcataaaattatgaagaaaaata--atagaaaaagagattaaatagccttattacctcaggtgtaaaagtgagagcaacctta |
12143499 |
T |
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| Q |
271 |
atctctccacaatatt |
286 |
Q |
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| T |
12143500 |
acctctccacaatatt |
12143515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 12150135 - 12150199
Alignment:
| Q |
12 |
acagaacactatgatatcatcacaccagaaaacacaatgattaaagttcctaaatgttctcaaaa |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12150135 |
acagaacactatgatatcatcacaccagaaaacacaatgattaaagttcctaaatgttctcaaaa |
12150199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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