View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9203_low_16 (Length: 258)

Name: NF9203_low_16
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9203_low_16
NF9203_low_16
[»] chr8 (4 HSPs)
chr8 (24-238)||(15597888-15598102)
chr8 (68-125)||(17878953-17879010)
chr8 (101-154)||(1210604-1210661)
chr8 (101-154)||(13431522-13431579)
[»] chr5 (6 HSPs)
chr5 (40-154)||(12078095-12078211)
chr5 (98-154)||(26120701-26120760)
chr5 (106-154)||(12353753-12353801)
chr5 (98-154)||(25770522-25770578)
chr5 (98-154)||(31589876-31589936)
chr5 (101-154)||(30742135-30742191)
[»] chr3 (5 HSPs)
chr3 (37-154)||(16093670-16093791)
chr3 (101-154)||(15902393-15902449)
chr3 (98-155)||(16881443-16881503)
chr3 (98-154)||(13698556-13698615)
chr3 (101-154)||(28581292-28581349)
[»] chr1 (4 HSPs)
chr1 (37-125)||(23549556-23549644)
chr1 (93-152)||(25398671-25398733)
chr1 (101-154)||(10250194-10250246)
chr1 (42-125)||(24218598-24218682)
[»] chr7 (5 HSPs)
chr7 (24-154)||(3779451-3779584)
chr7 (102-155)||(18362460-18362517)
chr7 (68-153)||(9802280-9802368)
chr7 (83-125)||(16812269-16812311)
chr7 (93-125)||(19416467-19416499)
[»] chr4 (5 HSPs)
chr4 (37-154)||(15192995-15193115)
chr4 (37-125)||(32469246-32469334)
chr4 (100-157)||(22089475-22089535)
chr4 (101-154)||(3106274-3106329)
chr4 (101-154)||(40859900-40859957)
[»] chr2 (8 HSPs)
chr2 (34-152)||(16735750-16735872)
chr2 (68-154)||(22790083-22790173)
chr2 (37-125)||(27747238-27747326)
chr2 (40-125)||(14866587-14866672)
chr2 (98-155)||(22682641-22682702)
chr2 (101-154)||(23185178-23185233)
chr2 (101-154)||(23596441-23596496)
chr2 (101-154)||(28551768-28551825)
[»] scaffold0606 (1 HSPs)
scaffold0606 (37-155)||(4811-4929)
[»] chr6 (7 HSPs)
chr6 (83-154)||(24471243-24471318)
chr6 (52-125)||(31720393-31720466)
chr6 (51-123)||(13242507-13242579)
chr6 (107-155)||(17317394-17317442)
chr6 (101-158)||(15301409-15301470)
chr6 (97-154)||(15551235-15551296)
chr6 (86-152)||(30372574-30372646)
[»] scaffold0045 (1 HSPs)
scaffold0045 (101-154)||(88456-88513)
[»] scaffold0205 (1 HSPs)
scaffold0205 (105-156)||(813-868)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 15598102 - 15597888
Alignment:
Q  24 ttataatccactacacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacaca 123  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15598102 ttataatccactgcacttaactctgatcattgcttcaggttctgaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacaca 15598003  T
Q  124 atataacccccttgtgtttttctcaccttcagaatttatatgagatttgagcatacctttgaaagaaatctgataggacttcaacatttgagtctgctcc 223  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15598002 atacaacccccttgtgtttttctcaccttcagaatttgtatgagatttgagcatacctttgaaagaaatctgataggacttcaacatttgagtctgctcc 15597903  T
Q  224 tttacaaaacaacat 238  Q
    |||||||||||||||    
T  15597902 tttacaaaacaacat 15597888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 17879010 - 17878953
Alignment:
Q  68 aactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    |||||||| ||||| |||||||| |||||  || ||||||||||||||||||||||||    
T  17879010 aactctatcagaagctgaactttaaactttgtttaaaagaagaaaaagttaacacaat 17878953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 1210604 - 1210661
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||    |||||||||||||||||||||    
T  1210604 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 1210661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 13431522 - 13431579
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||    |||||||||||||||||||||    
T  13431522 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 13431579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 12078211 - 12078095
Alignment:
Q  40 ttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataac--ccccttg 137  Q
    |||||| ||| |||||||||||||||| ||||||||||||| || ||| ||| ||||| ||||||||||||||||  |||||||||  |||  |||| |     
T  12078211 ttaactctgaacattgcttcaggttctgaactctattagaattttaacctttgacttagttaaaaagaagaaaaatctaacacaattcaacatcccccta 12078112  T
Q  138 tgtttttctcaccttca 154  Q
    |||||||||||||||||    
T  12078111 tgtttttctcaccttca 12078095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 26120701 - 26120760
Alignment:
Q  98 tttaaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttca 154  Q
    |||||||||||||||||| |||||||||  ||||||   |||||||||||||||||||||    
T  26120701 tttaaaaagaagaaaaagctaacacaattcaacccccttcttgtgtttttctcaccttca 26120760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 12353753 - 12353801
Alignment:
Q  106 gaagaaaaagttaacacaatataacccccttgtgtttttctcaccttca 154  Q
    ||||||||||||||||||||  ||||||| ||||||||| |||||||||    
T  12353753 gaagaaaaagttaacacaattcaacccccctgtgtttttttcaccttca 12353801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 25770522 - 25770578
Alignment:
Q  98 tttaaaaagaagaaaaagttaacacaatataacccccttgtgtttttctcaccttca 154  Q
    |||||||||||||||||| |||||||||  ||||||  | |||||||||||||||||    
T  25770522 tttaaaaagaagaaaaagctaacacaattcaacccctctatgtttttctcaccttca 25770578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 31589876 - 31589936
Alignment:
Q  98 tttaaaaagaagaaaaagttaacacaatataaccccc----ttgtgtttttctcaccttca 154  Q
    |||||||||||||||||| |||||||||  |||||||    ||||||||||||||||||||    
T  31589876 tttaaaaagaagaaaaagctaacacaattcaaccccccttattgtgtttttctcaccttca 31589936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 30742191 - 30742135
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttca 154  Q
    |||||||||||||||| ||||||||  ||||||   |||||||||||||||||||||    
T  30742191 aaaaagaagaaaaagtcaacacaattcaacccccttcttgtgtttttctcaccttca 30742135  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 16093791 - 16093670
Alignment:
Q  37 cacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataacccc--- 133  Q
    ||||||||||||| |||||||||||||| | |||||||| | ||| ||||||||  ||| | || |||||||||||||| |||||||||  || |||       
T  16093791 cacttaactttgaacattgcttcaggttatgaactctatcataagctgaactttgtactaaatttaaaagaagaaaaagctaacacaatccaaaccctct 16093692  T
Q  134 -cttgtgtttttctcaccttca 154  Q
     |||||||||||||||||||||    
T  16093691 tcttgtgtttttctcaccttca 16093670  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 15902449 - 15902393
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||   |||||||||||||||||||||    
T  15902449 aaaaagaagaaaaagctaacacaattcaacccccttcttgtgtttttctcaccttca 15902393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 16881503 - 16881443
Alignment:
Q  98 tttaaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttcag 155  Q
    |||| ||||||||||||||||| |||||  ||||||   ||||||||||||||||||||||    
T  16881503 tttataaagaagaaaaagttaaaacaattcaacccccttcttgtgtttttctcaccttcag 16881443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 13698615 - 13698556
Alignment:
Q  98 tttaaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttca 154  Q
    |||||||||||||||||| |||||||||  ||||||   ||| |||||||||||||||||    
T  13698615 tttaaaaagaagaaaaagctaacacaattcaaccccattcttatgtttttctcaccttca 13698556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 28581349 - 28581292
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||    |||||||||||||||||||||    
T  28581349 aaaaagaagaaaaagctaacacaattcaacccccattcttgtgtttttctcaccttca 28581292  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 23549644 - 23549556
Alignment:
Q  37 cacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    ||||||||| ||| ||||||| |||||||| |||||||| ||||| ||||||||  ||||| ||||||||||||||||  |||||||||    
T  23549644 cacttaactctgaacattgctccaggttctgaactctatcagaagctgaactttggacttagttaaaaagaagaaaaaactaacacaat 23549556  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 25398733 - 25398671
Alignment:
Q  93 acttatttaaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcacctt 152  Q
    ||||| |||||||||||||||| ||||||||||  ||||||   |||||||||||||||||||    
T  25398733 acttagttaaaaagaagaaaaaattaacacaattcaacccccttcttgtgtttttctcacctt 25398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 10250246 - 10250194
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccccttgtgtttttctcaccttca 154  Q
    ||||||||||||||   |||||||| | ||||||||||||||||||||||||||    
T  10250246 aaaaagaagaaaaaaccaacacaat-tcacccccttgtgtttttctcaccttca 10250194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 24218682 - 24218598
Alignment:
Q  42 aactttgatcattgcttcaggttctaaactctattagaagttgaacttttaactta-tttaaaaagaagaaaaagttaacacaat 125  Q
    |||| ||| |||||||||||  ||| |||||||| |||  ||| ||||| |||||| |||||||||||||||||  |||||||||    
T  24218682 aactgtgaacattgcttcagaatctgaactctatcagactttggactttgaacttagtttaaaaagaagaaaaaactaacacaat 24218598  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 3779451 - 3779584
Alignment:
Q  24 ttataatccactacacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacaca 123  Q
    |||||||||  | ||||||||||||| |||||||||||  ||| |||||||  ||| ||||||||||  ||||| ||||| | ||||||||| |||||||    
T  3779451 ttataatccgttgcacttaactttgaacattgcttcagactctgaactctaccagaggttgaactttagacttagttaaataaaagaaaaagctaacaca 3779550  T
Q  124 atataacccc---cttgtgtttttctcaccttca 154  Q
    ||  ||||||   ||| |||||||||||||||||    
T  3779551 attcaacccccttcttatgtttttctcaccttca 3779584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 18362460 - 18362517
Alignment:
Q  102 aaaagaagaaaaagttaacacaatataaccc----ccttgtgtttttctcaccttcag 155  Q
    ||||||||||||||||||||||||  |||||    |||||||||||||||||||||||    
T  18362460 aaaagaagaaaaagttaacacaattcaacccatctccttgtgtttttctcaccttcag 18362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 9802368 - 9802280
Alignment:
Q  68 aactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttc 153  Q
    |||||||||||||  ||||||||  | ||| || |||||||||||||  |||||||||  ||||||   ||||||||||||||||||||    
T  9802368 aactctattagaatctgaactttggaattagttcaaaagaagaaaaatctaacacaattcaacccccttcttgtgtttttctcaccttc 9802280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 16812311 - 16812269
Alignment:
Q  83 tgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    |||||||| |||||| ||||||||||||||||| |||||||||    
T  16812311 tgaactttgaacttagttaaaaagaagaaaaagctaacacaat 16812269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 19416499 - 19416467
Alignment:
Q  93 acttatttaaaaagaagaaaaagttaacacaat 125  Q
    ||||||||||||||||||||||| |||||||||    
T  19416499 acttatttaaaaagaagaaaaagctaacacaat 19416467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 15193115 - 15192995
Alignment:
Q  37 cacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataaccccctt 136  Q
    ||||||||| ||| |||||||| |||||||||| ||||| ||||| |||||||   ||||| || |||| ||||||||| ||||||||| |||||| |||    
T  15193115 cacttaactctgaacattgctttaggttctaaaatctatcagaagctgaacttcagacttagtttaaaacaagaaaaagctaacacaatctaaccctctt 15193016  T
Q  137 gt---gtttttctcaccttca 154  Q
     |   ||||||||||||||||    
T  15193015 cttatgtttttctcaccttca 15192995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 32469246 - 32469334
Alignment:
Q  37 cacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    ||||||||| ||| |||||||||||||| | |||||||| ||||||||||||| | ||| | |||||||  |||||||  |||||||||    
T  32469246 cacttaactgtgaacattgcttcaggttttgaactctatcagaagttgaacttctgactcaattaaaaacgagaaaaaactaacacaat 32469334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 22089535 - 22089475
Alignment:
Q  100 taaaaagaagaaaaagttaacacaatataacccc---cttgtgtttttctcaccttcagaa 157  Q
    ||||| ||||||||||||||||||||  ||||||   ||||||||||||||||||||||||    
T  22089535 taaaacgaagaaaaagttaacacaattcaacccccttcttgtgtttttctcaccttcagaa 22089475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 3106274 - 3106329
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc--cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||  ||||||||||||| |||||||    
T  3106274 aaaaagaagaaaaagctaacacaattcaaccccttcttgtgtttttcttaccttca 3106329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 40859957 - 40859900
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||    |||||||||||||||||||||    
T  40859957 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 40859900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 152
Target Start/End: Original strand, 16735750 - 16735872
Alignment:
Q  34 ctacacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataacccc 133  Q
    ||||||||| || | | |||| ||||||||||| |||||||| ||||| |||| ||| |||||| ||||||||||||||||  |||||||||  |||| |    
T  16735750 ctacacttagctctaaacatttcttcaggttctgaactctatcagaagctgaaatttgaacttagttaaaaagaagaaaaaactaacacaattcaacctc 16735849  T
Q  134 ----cttgtgtttttctcacctt 152  Q
        |||||||||||||||||||    
T  16735850 tcttcttgtgtttttctcacctt 16735872  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 22790173 - 22790083
Alignment:
Q  68 aactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataaccccc----ttgtgtttttctcaccttca 154  Q
    |||||||| ||||| ||||||||  | || |||||||||||||||||  |||||||||  |||||||    ||||||||||||||||||||    
T  22790173 aactctatcagaagctgaactttggagttctttaaaaagaagaaaaatctaacacaatccaacccccttttttgtgtttttctcaccttca 22790083  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 27747238 - 27747326
Alignment:
Q  37 cacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    ||||||||||||| |||| ||||||||||| |||||| | ||||  ||||| ||  ||||  ||||||| |||||||| ||||||||||    
T  27747238 cacttaactttgaacattacttcaggttctgaactctgtcagaatctgaacattggacttggttaaaaacaagaaaaatttaacacaat 27747326  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 14866672 - 14866587
Alignment:
Q  40 ttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    |||||| ||| ||||| ||||| |||| || |||||  |||| ||||||||  ||||| ||||||||||||||||  |||||||||    
T  14866672 ttaactctgaacattgtttcagattctgaaatctatcggaagctgaactttggacttagttaaaaagaagaaaaaactaacacaat 14866587  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 22682702 - 22682641
Alignment:
Q  98 tttaaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttcag 155  Q
    |||||||| |||||||||||||||||||  ||||||    |||||||||||| |||||||||    
T  22682702 tttaaaaataagaaaaagttaacacaattcaaccccccttcttgtgtttttcacaccttcag 22682641  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 23185178 - 23185233
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataa--cccccttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||  ||||||||||||||||| |||||||    
T  23185178 aaaaagaagaaaaagctaacacaattcaacccccccttgtgtttttcttaccttca 23185233  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 23596441 - 23596496
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataa--cccccttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||  ||||||||||||||||| |||||||    
T  23596441 aaaaagaagaaaaagctaacacaattcaacccccccttgtgtttttcttaccttca 23596496  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 28551768 - 28551825
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    ||||||||||||||| |||||||||  ||||||    |||||||||||||||||||||    
T  28551768 aaaaagaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttca 28551825  T

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Target: scaffold0606 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 4929 - 4811
Alignment:
Q  37 cacttaactttgatcattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaatataaccccctt 136  Q
    ||||||||| ||| |||| ||| ||||| | |||||||| ||||| ||||| ||  || || |||||||  |||||||||||||||||| |||| |||||    
T  4929 cacttaactctgaacattactttaggttatgaactctatcagaagctgaacattggacctagttaaaaacgagaaaaagttaacacaatttaactccctt 4830  T
Q  137 gtgtttttctcaccttcag 155  Q
     | |||||||||| |||||    
T  4829 atatttttctcactttcag 4811  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 24471243 - 24471318
Alignment:
Q  83 tgaacttttaacttatttaaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    |||||||| |||||| |||||||||||||||||||||||||||  |||| |    |||||||||||||||||||||    
T  24471243 tgaactttgaacttagttaaaaagaagaaaaagttaacacaattcaaccactcttcttgtgtttttctcaccttca 24471318  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 31720393 - 31720466
Alignment:
Q  52 attgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacacaat 125  Q
    |||| |||||||||| || ||||| | ||||||||||||  ||||  |||||||||||||||||||||||||||    
T  31720393 attgattcaggttctgaattctatcaaaagttgaactttggacttggttaaaaagaagaaaaagttaacacaat 31720466  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 13242579 - 13242507
Alignment:
Q  51 cattgcttcaggttctaaactctattagaagttgaacttttaacttatttaaaaagaagaaaaagttaacaca 123  Q
    |||||||||||||| |||| ||||| ||||| ||||| ||  ||||| || |||| |||||||||||||||||    
T  13242579 cattgcttcaggttttaaaatctatcagaagctgaacattggacttaatttaaaacaagaaaaagttaacaca 13242507  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 17317394 - 17317442
Alignment:
Q  107 aagaaaaagttaacacaatataacccccttgtgtttttctcaccttcag 155  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||||||||    
T  17317394 aagaaaaagctaacacaattcaacccccctgtgtttttctcaccttcag 17317442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 15301470 - 15301409
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataaccccc----ttgtgtttttctcaccttcagaat 158  Q
    |||| |||||||||| |||||||||  |||||||    ||||||||||||||||||||||||    
T  15301470 aaaacgaagaaaaagctaacacaattcaaccccccttcttgtgtttttctcaccttcagaat 15301409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 15551296 - 15551235
Alignment:
Q  97 atttaaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    ||||||||||||||||||  |||||||||  ||||||    |||||||||||||||||||||    
T  15551296 atttaaaaagaagaaaaatctaacacaattcaaccccccttcttgtgtttttctcaccttca 15551235  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 30372646 - 30372574
Alignment:
Q  86 acttttaacttatttaaaaagaa--gaaaaagttaacacaatataacccc----cttgtgtttttctcacctt 152  Q
    ||||| |||||| ||||||||||  |||||||||||||||||  ||||||    |||||||||||||||||||    
T  30372646 actttgaacttagttaaaaagaaaagaaaaagttaacacaattcaaccccctttcttgtgtttttctcacctt 30372574  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 88456 - 88513
Alignment:
Q  101 aaaaagaagaaaaagttaacacaatataacccc----cttgtgtttttctcaccttca 154  Q
    |||||||||||||||||||||||||  ||||||    |||||||||||||||||||||    
T  88456 aaaaagaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcaccttca 88513  T

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Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 813 - 868
Alignment:
Q  105 agaagaaaaagttaacacaatataaccccc----ttgtgtttttctcaccttcaga 156  Q
    |||||||||||||||||||||  |||||||    ||||||||||||||||||||||    
T  813 agaagaaaaagttaacacaattcaaccccccttcttgtgtttttctcaccttcaga 868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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