View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9203_low_17 (Length: 241)
Name: NF9203_low_17
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36298195 - 36298418
Alignment:
| Q |
1 |
ccctataacaactaaactaactaactaactataagtagttatgctgatttgtttcatgaacaccttttcatagatattcctttacaagattttcaccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36298195 |
ccctataacaactaaactaactaactaactataagtggttatgctgatttgtttcatgaacaccttttcatagatattcctttacaagattttcaccaaa |
36298294 |
T |
|
| Q |
101 |
tgaagtactgaagaatccacactcttctctcattccattgatacacagaaaaattctatgcaagattgataatacagaagaagatgaaaagaattagtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36298295 |
tgaagtactgaagaatccacactcttctctcattccattgatacacagaaaaattctatgcaagattgataatacagaagaagatgaaaagaattagtca |
36298394 |
T |
|
| Q |
201 |
ctatctcaagcttttaactttgat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36298395 |
ctatctcaagcttttaactttgat |
36298418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 48301533 - 48301329
Alignment:
| Q |
19 |
aactaactaactataagtagttatgctgat--ttgtttcatgaacaccttttcatagatattcctttacaagattttcaccaaatgaagtactgaagaat |
116 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||| ||| ||||||||||||| |||||||||||| || |||||||||||||| || |
|
|
| T |
48301533 |
aactaactaactatat-tagttatactgatagttgtttcatgaacactttt--atagatattccttgacaagattttcaacagatgaagtactgaagtat |
48301437 |
T |
|
| Q |
117 |
ccacactcttctctcattccattgatacacagaaaaattctatgcaagattgataatacagaagaagatgaaaagaattagtcactatctcaagctttta |
216 |
Q |
| |
|
||| | ||||| ||||||| ||||| | | ||||| || ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
48301436 |
ccaaattcttccctcattctattgacgtgaatacaaatttcgtgtaagatccataatacagaagaagatgaaaagaacaagtcactatctgaagctttta |
48301337 |
T |
|
| Q |
217 |
actttgat |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
48301336 |
actttgat |
48301329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 48301020 - 48300977
Alignment:
| Q |
181 |
aagatgaaaagaattagtcactatctcaagcttttaactttgat |
224 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
48301020 |
aagatgaaaagaataagtcattatctgaagcttttaactttgat |
48300977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University