View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9203_low_3 (Length: 640)
Name: NF9203_low_3
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 21 - 622
Target Start/End: Original strand, 1552832 - 1553433
Alignment:
| Q |
21 |
cacagacacatcttacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcac |
120 |
Q |
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| T |
1552832 |
cacagacacatcttacttcattaaattggtttttgtttgcatttgcttgtgtttatctacctaaattaacatcaacaatagcaaaagatagaaagagcac |
1552931 |
T |
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| Q |
121 |
agtggagtggaacatagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaa |
220 |
Q |
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| T |
1552932 |
agtggagtggaacatagtgtccacgtggttggaagccaaatcagctgaggatggaaatccatttcctattggtccaaaatctatccacgatataccttaa |
1553031 |
T |
|
| Q |
221 |
gatttcttgtttagatttcattgtcctacttggccttctatgaaaaccccttcagattctcacacacactcataaaatactctctaactagttcagttca |
320 |
Q |
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| T |
1553032 |
gatttcttgtttagatttcattgtcctacttggccttctatgaaaaccccttcagattctctcacacactcataaaatactctctaactagttcagttca |
1553131 |
T |
|
| Q |
321 |
gttcccaagtgaactacaaaaccagtctcattactctttatctctagaagacaaatggcagctgcaacatctggtgctgtgttgaatggtttgggatctt |
420 |
Q |
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| T |
1553132 |
attcccaagtgaactacaaaaccagtctcattactctttatctctagaagacaaatggcagctgcaacatctggtgctgtgttgaatggtttgggatctt |
1553231 |
T |
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| Q |
421 |
ccttcttatctggaggaaagagaagccaaaccttgttagctactactgctattggagccaaagttggtgttgcagctggtagtcctaaaagacttattgt |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553232 |
ccttcttatctggaggaaagagaagccaaaccttgttagctactactgctattggagccaaagttggtgttgcagctggtagtcctaaaagacttattgt |
1553331 |
T |
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| Q |
521 |
tgctgctgctgcttctgcaccaaagaagtcatggatccctggtgttagatttggtggaaacctcgtcgacccagaatggctcgatggatcgtaagtccac |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1553332 |
tgctgctgctgcttctgcaccaaagaagtcatggatccctggtgttagatttggtggaaacctcgtcgacccagaatggctcgatggatcgtaagtccac |
1553431 |
T |
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| Q |
621 |
tt |
622 |
Q |
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| T |
1553432 |
tt |
1553433 |
T |
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