View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9203_low_5 (Length: 630)
Name: NF9203_low_5
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9203_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 46550017 - 46549404
Alignment:
| Q |
1 |
aagcataaataacttaaaaagaatgtaccacatgtaattcaaacacacatcacacggcaaataacttgccatagacttcagaaaatgtctggtggtgaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46550017 |
aagcataaataacttaaaaagaatgtaccacatgtaattcaaacacacatcacacggcaaataacttgccctagacttcagaaaatgtctggtggtgaag |
46549918 |
T |
|
| Q |
101 |
caacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaaaacgcaaagttgcatataatatgcattaaattaaattcataccagtgataaatt |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549917 |
taacgaaaacaaaggttcaaccaaatttttgctggctaatacttaaaacgcaaagttgcatataatatgcattaaattaaattcataccagtgataaatt |
46549818 |
T |
|
| Q |
201 |
gtagacgacaaaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46549817 |
gtagacgacaaaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgagtttg |
46549718 |
T |
|
| Q |
301 |
tgatacctgaggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
46549717 |
tgatacctgaggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacgccgtatcttgaatcgaaacatctgg |
46549618 |
T |
|
| Q |
401 |
accatttggtaagaattctggtttgattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattatacca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46549617 |
accatttggtaagaattctggtttgattgtgtataacattctccatagagaagacagccagggatcaagagtaccttcgtagctacaaataattatacca |
46549518 |
T |
|
| Q |
501 |
tcattagtcacttaaataaaatatctacatttcaatattaaagaagaagaaagtattaaagcttgcacagcaagctatcactagagtctctactaacact |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46549517 |
tcattagtcacttaaataaaatatctacatttcaatattaaagaagaagaaagtattaaagcttgcacggcaagctatcactagagtctctactaacact |
46549418 |
T |
|
| Q |
601 |
atagtctctaaact |
614 |
Q |
| |
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|||||||||||||| |
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| T |
46549417 |
atagtctctaaact |
46549404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 1026568 - 1025962
Alignment:
| Q |
1 |
aagcataaataacttaaaaagaatgtaccacatgtaattcaaacacacatcacacggcaaataactt-gccata--gacttcagaaaatgtctggtggtg |
97 |
Q |
| |
|
|||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
1026568 |
aagcatcaataacttaaaaggaatgtaccatatgtaattcaaacacaca-------gcaaataactttgccatatagacttcagaaaatgtctggtggtg |
1026476 |
T |
|
| Q |
98 |
aagcaacgaaaacaaaggttcaaccaaatttgtgctggctaatacttaaaacgcaaagttgcatataatatgcattaaattaaattcataccagtgataa |
197 |
Q |
| |
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||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
1026475 |
aagtaacgaaaacaaaggttcaaccaaatttgtgttgtctaatacttaatacgcaaagttgcatataatatgcatcat-ttaaattcataccagtgataa |
1026377 |
T |
|
| Q |
198 |
attgtagacgacaaaatgaacataaataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgatt |
297 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| | ||| |||| | |
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|
| T |
1026376 |
attgtagacgacaaaataaacatacataaatagattgtctgagattaggtcacaataacagctaatggaatattgcaagccaaccaagaatttaccgagt |
1026277 |
T |
|
| Q |
298 |
ttgtgatacctgaggcagttgaaaaatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
1026276 |
ttgtgatacctgaggcagttgaaaaatgtgactcgatattgtgatatgtaatttggactttaggttggtcaatcaacactgtatcttgaatcgaaacatc |
1026177 |
T |
|
| Q |
398 |
tggaccatttggtaagaattctggtttgattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattata |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1026176 |
tggaccatttggtaagaattctggtttgatcgtgtttaaaattctccatagagaagacatccagggatcaagagtaccttcatagctacaaataattata |
1026077 |
T |
|
| Q |
498 |
ccatcattagtcacttaaataaaatatctacatttcaatattaaagaagaagaaagtattaaagcttgcacagcaagctatcactagagtctctactaac |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1026076 |
ccatcattagtcacttaaataaaatatctacatttcaatattaaagaagaagaaattattaaagcttgcacagcaagctatcactagagtctctactaac |
1025977 |
T |
|
| Q |
598 |
actatagtctctaaact |
614 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
1025976 |
ac--tagtctctaaact |
1025962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 34 - 551
Target Start/End: Complemental strand, 40828277 - 40827760
Alignment:
| Q |
34 |
gtaattcaaacacacatcacacggcaaataacttgccatagacttcagaaaatgtctg--gtggtgaagcaacgaaaacaaaggttcaaccaaatttgtg |
131 |
Q |
| |
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||||| |||||| ||||| ||| || | ||||||||||| ||||| | |||||||||| ||||||||| || |||||||||||||||||||| ||| | |
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| T |
40828277 |
gtaatccaaacaaacatcgcacagccattaacttgccatcgactttacaaaatgtctgtggtggtgaagtaatgaaaacaaaggttcaaccaatttttta |
40828178 |
T |
|
| Q |
132 |
ctggctaatacttaaaacgcaaagttgcatataatatgcattaaatt---aaattcataccagtgataaattgtagacgacaaaatgaacataaataaat |
228 |
Q |
| |
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| ||||||||| | |||| ||||| ||||||||||| ||| | ||||||| |||| || ||| ||||| |||||| |||||| |||||| |
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| T |
40828177 |
caacctaatacttggtatacaaaattgcaaataatatgcatcgtatttttatattcatataagtggtagattatagacaacaaaagaaacatacataaat |
40828078 |
T |
|
| Q |
229 |
agattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaaatgtga |
328 |
Q |
| |
|
||| |||||||| ||||||||||| || ||| || ||||||| |||||||| | || | || |||||||||||||||| | ||| | | | | |
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|
| T |
40828077 |
agactgtctgag-----gtcacaataattactgatggaacattgcaagccaaccaagaaattactgagtttgtgatacctgaggaa--tgagacacgaca |
40827985 |
T |
|
| Q |
329 |
ct--caatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttga |
426 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||| ||||||||||| |
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|
| T |
40827984 |
ttttcaatattgtgatatgtgatttggactttaggttggtcaatcaacgttgtatcttgaatcaaaacatctggaccactaggtaagagttctggtttga |
40827885 |
T |
|
| Q |
427 |
ttgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatatct |
526 |
Q |
| |
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| ||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| |||||||||| |||||| |||||||||||| ||| |
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|
| T |
40827884 |
tcatgtttaacattctccatagagaagacagccaaggatcaagagtaccttcatagctgcaaatagttataccatctttagtcccttaaataaaatctct |
40827785 |
T |
|
| Q |
527 |
acatttcaatattaaagaagaagaa |
551 |
Q |
| |
|
| | | |||||| |||||||||||| |
|
|
| T |
40827784 |
ataatccaatatcaaagaagaagaa |
40827760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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