View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9203_low_7 (Length: 600)

Name: NF9203_low_7
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9203_low_7
NF9203_low_7
[»] chr7 (17 HSPs)
chr7 (17-586)||(39577095-39577664)
chr7 (123-586)||(39591678-39592141)
chr7 (123-451)||(39550601-39550929)
chr7 (123-433)||(39541343-39541653)
chr7 (188-433)||(39346160-39346405)
chr7 (115-437)||(39624155-39624477)
chr7 (188-433)||(39334902-39335147)
chr7 (188-399)||(39360745-39360956)
chr7 (123-410)||(39567394-39567681)
chr7 (514-586)||(39334759-39334831)
chr7 (514-586)||(39346023-39346095)
chr7 (512-578)||(39541726-39541792)
chr7 (514-578)||(39567776-39567840)
chr7 (517-586)||(39360567-39360636)
chr7 (518-578)||(39550989-39551049)
chr7 (251-305)||(38390680-38390734)
chr7 (355-433)||(42176005-42176083)
[»] chr8 (2 HSPs)
chr8 (115-309)||(28940952-28941146)
chr8 (342-399)||(4497932-4497989)
[»] chr4 (3 HSPs)
chr4 (124-399)||(2900481-2900756)
chr4 (161-399)||(2884208-2884446)
chr4 (161-399)||(2874214-2874452)
[»] chr3 (1 HSPs)
chr3 (352-436)||(49770199-49770283)
[»] chr1 (1 HSPs)
chr1 (352-399)||(2163908-2163955)
[»] chr6 (1 HSPs)
chr6 (362-428)||(3828409-3828475)


Alignment Details
Target: chr7 (Bit Score: 558; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 17 - 586
Target Start/End: Original strand, 39577095 - 39577664
Alignment:
Q  17 caatattgttgttgatctttcattgatgtcacctaaagcataatgggcaaaattaaatagttaaaattcactcgtccatatagattgtagaaagaagtta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577095 caatattgttgttgatctttcattgatgtcacctaaagcataatgggcaaaattaaatagttaaaattcactcgtccatatagattgtagaaagaagtta 39577194  T
Q  117 aatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577195 aatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggacc 39577294  T
Q  217 ctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattg 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577295 ctggtacacaatgtgcccctcagagagtagaataatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattg 39577394  T
Q  317 agcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577395 agcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttc 39577494  T
Q  417 ccactagcatctcccctgtattaataggttcataagattttatcattgtcactttgttattgtgaatcatgatgtgtacctcaatactgaaattatgttt 516  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39577495 ccactagcatctcccctgtattaataggttcataagattttctcattgtcactttgttatcgtgaatcatgatgtgtacctcaatactgaaattatgttt 39577594  T
Q  517 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacag 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577595 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacag 39577664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 123 - 586
Target Start/End: Original strand, 39591678 - 39592141
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| ||||||||||||||||||||||| | ||| ||  || | ||  ||||||| | |||||||||||| || ||||| || ||||| ||||| || ||    
T  39591678 cactcacttcttgtaaaaagtctgccacagctttcctcgcatggcatatgaaacccattgaagcaaaaaaatcgagcacatgctcacagggaccttgata 39591777  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
    |||||| |||||||||||||||||||| |||||||| |||||||  |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||     
T  39591778 cacaatatgcccctcagagagtagaataatgtcgtcgaaaagatagtaagtctcaggtggtggctgcaagagtgagattacagcagttcctttgagaaga 39591877  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccacta 422  Q
    |||||||| ||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |    
T  39591878 tggacataatgcatcactgatctcacaacttgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaaaagagccttagctggtcctacca 39591977  T
Q  423 gcatctcccctgtattaataggttcataagattttatcattgtcactttgttattgtgaatcatgatgtgtacctcaatactgaaattatgtttgtttta 522  Q
    |||||||||||||||| |||| ||| ||||| ||| ||||||||||||| || | |||||||    ||| ||| |||||| |||||| | ||  ||||||    
T  39591978 gcatctcccctgtatttatagattcgtaagagtttctcattgtcactttattgtagtgaatcgaattgtatacttcaatattgaaatgacgtcggtttta 39592077  T
Q  523 cctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacag 586  Q
    |||||||| || ||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  39592078 cctgtcgttacacgttttctttgtcctccagaaatacctcttaacatttcatttcccaccacag 39592141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 123 - 451
Target Start/End: Original strand, 39550601 - 39550929
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| |||||||| ||||| |||||||||  ||| || |||||||| || ||||| | |||  | ||||||||||||||||| ||||  ||||| |||||    
T  39550601 cactcacttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccaattgattcgaaaaattcaagcacgtgctcacggggaccttggta 39550700  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
     | |||||| |  |||||||||||||| ||||||||||||||||  |||||||||||||||||||| | ||| ||||| || |||||||| ||||| | |    
T  39550701 tataatgtgactatcagagagtagaataatgtcgtcaaaaagattgtaagtctctggtggtggctgaaggagcgagatgaccgcagttcctttgagaatg 39550800  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccacta 422  Q
    |||||| | ||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || | ||| || |    
T  39550801 tggacaaattgcttcattgaattcacaatctgaaaagttgtcgagctatccaaaccagtagatatttcatccatgaatagagctttcgccggtccaacca 39550900  T
Q  423 gcatctcccctgtattaataggttcataa 451  Q
     ||||||||||| ||| |||| |||||||    
T  39550901 acatctcccctgcattgatagattcataa 39550929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 123 - 433
Target Start/End: Original strand, 39541343 - 39541653
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| |||||||| ||||| |||||||||  ||| || |||||||| || ||||| | |||  | ||||||||||||||||| ||||  ||||| |||||    
T  39541343 cactcacttcttgcaaaaaatctgccactcctttcctatcaggacatttaaaaccgattgattcgaaaaattcaagcacgtgctcacggggaccttggta 39541442  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
     | |||||| |  |||||||||||||| || || ||||||||||   | ||||||||||||||||| | ||||||||| ||||| ||||| ||||| | |    
T  39541443 tataatgtgactatcagagagtagaataatttcatcaaaaagattgaatgtctctggtggtggctgaaggagtgagatgacagccgttcctttgagaatg 39541542  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccacta 422  Q
    || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||  | ||| ||||    
T  39541543 tgtacatactgctttattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaatagagctttagtcggtccaacta 39541642  T
Q  423 gcatctcccct 433  Q
     ||||||||||    
T  39541643 acatctcccct 39541653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 188 - 433
Target Start/End: Complemental strand, 39346405 - 39346160
Alignment:
Q  188 aaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggct 287  Q
    |||||||||||||||||||| | |||||| ||||| | |||||| |  |||||||||||||| |||||||| || ||||  ||||| |||||||| ||||    
T  39346405 aaaaattcaagcacgtgttcccgaggaccttggtatataatgtgactatcagagagtagaataatgtcgtcgaatagattgtaagtttctggtggcggct 39346306  T
Q  288 gcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatat 387  Q
    ||| |||||||||||| || ||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39346305 gcaggagtgagatcaccgcggttcctttgagaatgtggacatattgcttcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatat 39346206  T
Q  388 ttcatccatgaaaagagccttagctgttcccactagcatctcccct 433  Q
    |||||||||||| | ||| |||| || ||| || | ||||||||||    
T  39346205 ttcatccatgaataaagctttagttggtccaaccaacatctcccct 39346160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 115 - 437
Target Start/End: Original strand, 39624155 - 39624477
Alignment:
Q  115 taaatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaagga 214  Q
    ||||||| ||||||||||||||||||||||| |||||| ||| || ||||||||| | ||||||| |||||||||||| |||||||| ||| ||||||||    
T  39624155 taaatttgcacttacttcttgtaaaaagtctaccactggtttcctctcaggacacataaaacctattgaagcaaaaaaatcaagcacttgtacacaagga 39624254  T
Q  215 ccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccat 314  Q
    || |||||||||||||| || || ||||||| ||| ||||| ||||||||||  ||||||||| ||| ||||||    |||||||||||||||||||  |    
T  39624255 ccttggtacacaatgtgtccatcggagagtaaaataatgtcatcaaaaagattgtaagtctctagtgatggctgttgtagtgagatcacagcagttcttt 39624354  T
Q  315 tgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgt 414  Q
    |||| |||| |||| | || ||||  |||||||||| |||||| | |||||||  |||||||||| ||||||| ||||||| ||| ||||  ||   ||     
T  39624355 tgagaaggtagacaaattgtttcagcgatttcacaatttgaaaggctgttgagtcatccaaaccaatagatatatcatccacgaatagagatttcaatgg 39624454  T
Q  415 tcccactagcatctcccctgtat 437  Q
    ||| |||||| ||||||||||||    
T  39624455 tccgactagcgtctcccctgtat 39624477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 188 - 433
Target Start/End: Complemental strand, 39335147 - 39334902
Alignment:
Q  188 aaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggct 287  Q
    |||||||||||||||||||| | |||||| ||||| | ||| || |  |||||||||||||| |||  |||||| ||||  ||||| |||||||| ||||    
T  39335147 aaaaattcaagcacgtgttcccgaggaccttggtatataatatgactatcagagagtagaataatgctgtcaaatagattgtaagtttctggtggcggct 39335048  T
Q  288 gcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatat 387  Q
    ||| |||||||||||| || ||||| ||||| | ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39335047 gcaggagtgagatcaccgcggttcctttgagaatgtggacatattgcttcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatat 39334948  T
Q  388 ttcatccatgaaaagagccttagctgttcccactagcatctcccct 433  Q
    |||||||||||| | ||| |||| || ||| || | ||||||||||    
T  39334947 ttcatccatgaataaagctttagttggtccaaccaacatctcccct 39334902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 188 - 399
Target Start/End: Complemental strand, 39360956 - 39360745
Alignment:
Q  188 aaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggct 287  Q
    |||||||||||||||||||| |  ||||| ||||| | |||||| |  ||||||||||| || ||||||||||||||||  |||||||||||||| ||||    
T  39360956 aaaaattcaagcacgtgttcccggggaccttggtaaataatgtgactatcagagagtagtataatgtcgtcaaaaagattgtaagtctctggtggaggct 39360857  T
Q  288 gcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatat 387  Q
    ||| ||||||||||||  | ||||| ||||| | ||| ||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39360856 gcaggagtgagatcaccacggttcctttgagaatgtgaacatattgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatat 39360757  T
Q  388 ttcatccatgaa 399  Q
    ||||||||||||    
T  39360756 ttcatccatgaa 39360745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 123 - 410
Target Start/End: Original strand, 39567394 - 39567681
Alignment:
Q  123 cacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggta 222  Q
    |||| |||||||| || || |||||||||  ||| || || ||||| || ||||| | |||  ||||||||||||| |||||||| |  ||||| |||||    
T  39567394 cactcacttcttgcaagaaatctgccactcctttcctatctggacatttaaaaccgattgattcaaaaaattcaagtacgtgttcccggggaccttggta 39567493  T
Q  223 cacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcagg 322  Q
     | |||| | |  |||||||||||||| | ||||||||||||||  |||||||||||||||||||||| ||||||||| |  || ||||||||||| | |    
T  39567494 tataatgcgactatcagagagtagaataacgtcgtcaaaaagattgtaagtctctggtggtggctgcaggagtgagataatggcggttccattgagaatg 39567593  T
Q  323 tggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttag 410  Q
    |||||||  ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||    
T  39567594 tggacatcttgcctcattgaattcacaatttgaaaagttgttgagctatccaaaccagtagatatttcgtccatgaatagagctttag 39567681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 514 - 586
Target Start/End: Complemental strand, 39334831 - 39334759
Alignment:
Q  514 tttgttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacag 586  Q
    |||||||||||||| ||||  |||||| ||||||| |||||||||||||||| ||||||||||||||| ||||    
T  39334831 tttgttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgcatttcccacaacag 39334759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 514 - 586
Target Start/End: Complemental strand, 39346095 - 39346023
Alignment:
Q  514 tttgttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacag 586  Q
    |||||||||||||| ||||  |||||| ||||||| |||||||||||||||| ||||||||||||||| ||||    
T  39346095 tttgttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgcatttcccacaacag 39346023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 578
Target Start/End: Original strand, 39541726 - 39541792
Alignment:
Q  512 tgtttgttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcc 578  Q
    ||||| |||||||||| ||||| |||||| ||||||| ||||||||||||| |||||||||||||||    
T  39541726 tgttttttttacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcatttcc 39541792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 514 - 578
Target Start/End: Original strand, 39567776 - 39567840
Alignment:
Q  514 tttgttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcc 578  Q
    |||||||||||||| ||||  |||||| ||||||| ||||||||||||| |||||||||||||||    
T  39567776 tttgttttacctgttgtaaggcgtttcttttgtccaccagagatacctcgtaacattgcatttcc 39567840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 586
Target Start/End: Complemental strand, 39360636 - 39360567
Alignment:
Q  517 gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccaccacag 586  Q
    ||||||||||| ||||  |||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  39360636 gttttacctgttgtaaggcgtttcttttgtccgccagagatagctcttatcattgcatttcccacaacag 39360567  T

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Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 518 - 578
Target Start/End: Original strand, 39550989 - 39551049
Alignment:
Q  518 ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcc 578  Q
    ||||||| || ||||| |||||| ||||||| ||||||||||||| |||||||||||||||    
T  39550989 ttttaccagttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcatttcc 39551049  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 38390734 - 38390680
Alignment:
Q  251 atgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacag 305  Q
    ||||| |||||||| | ||| |||||  |||||||||||||||||||||||||||    
T  38390734 atgtcatcaaaaagcttataggtctccagtggtggctgcaagagtgagatcacag 38390680  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 433
Target Start/End: Original strand, 42176005 - 42176083
Alignment:
Q  355 aaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccct 433  Q
    |||||| |||||||||||||| || || ||||||||||||||||| ||  | || |||| ||| || ||||||||||||    
T  42176005 aaaagtggttgagctatccaatcctgttgatatttcatccatgaagagtacttttgctggtcctaccagcatctcccct 42176083  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 28940952 - 28941146
Alignment:
Q  115 taaatttccacttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaagga 214  Q
    ||||||| |||||||||| |||||||||||| |||||| ||| ||||| |||||| | ||||| | |||||| ||||| ||| |||| | | ||||||||    
T  28940952 taaatttgcacttacttcctgtaaaaagtctaccactggtttcctttcgggacacataaaacccattgaagccaaaaaatcaggcacttatacacaagga 28941051  T
Q  215 ccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagt 309  Q
    || |||||||||||||| || |||||||||| ||| ||||| | ||||||||  ||||||||| ||| ||||||    ||||| |||||||||||    
T  28941052 ccttggtacacaatgtgtccatcagagagtaaaataatgtcataaaaaagatagtaagtctctagtgatggctgttgtagtgatatcacagcagt 28941146  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 4497989 - 4497932
Alignment:
Q  342 atttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 399  Q
    ||||||||| |||||| |||||||| ||||| | |||||| |||||||||||||||||    
T  4497989 atttcacaatttgaaatgttgttgaactatcaagaccagttgatatttcatccatgaa 4497932  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 124 - 399
Target Start/End: Original strand, 2900481 - 2900756
Alignment:
Q  124 acttacttcttgtaaaaagtctgccactgattttctttcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtac 223  Q
    |||||||||||| | |||||| || ||   ||| || |||||||| |||||||| | |||  ||||||| ||||| || |||||||  || || || ||     
T  2900481 acttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacatgttcacgcggtccttgatag 2900580  T
Q  224 acaatgtgcccctcagagagtagaattatgtcgtcaaaaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggt 323  Q
    ||||| || || || || |  ||||| ||||| |||||||| |||||||||||||||| ||| || |  |  ||||| || ||||||||||| || |  |    
T  2900581 acaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttccattaagaatat 2900680  T
Q  324 ggacatactgcttcattgatttcacaacttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 399  Q
    | ||||| ||| | |  |||||||||| ||| |||||||| || || ||||| |||||||||||||||||||||||    
T  2900681 gaacatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaa 2900756  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 161 - 399
Target Start/End: Complemental strand, 2884446 - 2884208
Alignment:
Q  161 tcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaa 260  Q
    |||||||| |||||||| | |||  ||||||||||||| |  ||||| | ||| || ||||| ||||| || || ||||| |  ||||| ||||| ||||    
T  2884446 tcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagacaatttgaccatcagatataagaataatgtcatcaa 2884347  T
Q  261 aaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagt 360  Q
    |||| ||||||||||| |||| ||| || |  |  ||||| || |  |||||||| || | ||| ||||| ||||  |  ||| |||||| ||| |||||    
T  2884346 aaagttcataagtctcaggtgctggttggagtaaagagataactgtggttccattaagaatgtgaacatattgctgaagagatctcacaatttggaaagt 2884247  T
Q  361 tgttgagctatccaaaccagtagatatttcatccatgaa 399  Q
    ||| || || |||||||||||||||||||||||||||||    
T  2884246 tgtggaactgtccaaaccagtagatatttcatccatgaa 2884208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 161 - 399
Target Start/End: Complemental strand, 2874452 - 2874214
Alignment:
Q  161 tcaggacacttgaaacctaatgaagcaaaaaattcaagcacgtgttcacaaggaccctggtacacaatgtgcccctcagagagtagaattatgtcgtcaa 260  Q
    |||||||| |||||||| |  ||  ||||||||||||| || | ||||| ||| || ||||| ||||| |  || ||||| |  ||||| ||||| ||||    
T  2874452 tcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaacaatttcaccatcagataaaagaataatgtcatcaa 2874353  T
Q  261 aaagatcataagtctctggtggtggctgcaagagtgagatcacagcagttccattgagcaggtggacatactgcttcattgatttcacaacttgaaaagt 360  Q
    |||| |||||||||||||||| |||||| |  | |||||| |  ||||||||||  || |  |  ||||| ||| | |  |||||||||| ||||||||     
T  2874352 aaagttcataagtctctggtgctggctgaagcaatgagataagtgcagttccatgaagaatataaacatattgcctaagagatttcacaatttgaaaagc 2874253  T
Q  361 tgttgagctatccaaaccagtagatatttcatccatgaa 399  Q
    ||| || ||||| || ||||| |||||||||||||||||    
T  2874252 tgtggaactatctaagccagttgatatttcatccatgaa 2874214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 49770283 - 49770199
Alignment:
Q  352 ttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatctcccctgta 436  Q
    |||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||  | |||| ||| ||||||||||| ||||||    
T  49770283 ttgaaatgttgttgaactgtccaaaccagtcgatatttcgtccatgaaaagcgctcttgctggtccaactagcatctcacctgta 49770199  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 2163908 - 2163955
Alignment:
Q  352 ttgaaaagttgttgagctatccaaaccagtagatatttcatccatgaa 399  Q
    ||||||||||||||| || ||||||||||| |||||||| ||||||||    
T  2163908 ttgaaaagttgttgaactgtccaaaccagttgatatttcgtccatgaa 2163955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 3828409 - 3828475
Alignment:
Q  362 gttgagctatccaaaccagtagatatttcatccatgaaaagagccttagctgttcccactagcatct 428  Q
    ||||| || ||||||||||| |||||||||||||||||||  ||  |||||| ||| ||||||||||    
T  3828409 gttgaactgtccaaaccagtcgatatttcatccatgaaaaccgctctagctggtccaactagcatct 3828475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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