View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9203_low_8 (Length: 536)

Name: NF9203_low_8
Description: NF9203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9203_low_8
NF9203_low_8
[»] chr8 (14 HSPs)
chr8 (189-353)||(17683697-17683861)
chr8 (189-353)||(17664541-17664705)
chr8 (189-334)||(39837482-39837627)
chr8 (187-323)||(4839713-4839849)
chr8 (189-324)||(17973565-17973700)
chr8 (188-318)||(39845541-39845671)
chr8 (189-334)||(30938282-30938427)
chr8 (189-324)||(25579742-25579877)
chr8 (189-334)||(1406993-1407138)
chr8 (189-317)||(26873541-26873669)
chr8 (189-317)||(26875991-26876119)
chr8 (450-501)||(17664393-17664444)
chr8 (450-501)||(17683549-17683600)
chr8 (189-283)||(4582204-4582298)
[»] chr2 (24 HSPs)
chr2 (187-353)||(20372214-20372380)
chr2 (189-353)||(20621518-20621682)
chr2 (189-334)||(14582925-14583070)
chr2 (189-334)||(15944477-15944622)
chr2 (189-334)||(15952992-15953137)
chr2 (189-334)||(35138593-35138738)
chr2 (189-334)||(35146929-35147074)
chr2 (189-334)||(41233764-41233909)
chr2 (189-334)||(38168277-38168422)
chr2 (189-334)||(42565849-42565994)
chr2 (189-334)||(42574473-42574618)
chr2 (217-334)||(35037884-35038001)
chr2 (189-298)||(44372705-44372814)
chr2 (189-298)||(44388616-44388725)
chr2 (189-283)||(17687369-17687463)
chr2 (189-300)||(25483601-25483712)
chr2 (189-300)||(25491207-25491318)
chr2 (450-501)||(20621788-20621839)
chr2 (189-314)||(35303737-35303862)
chr2 (188-283)||(27606616-27606710)
chr2 (189-283)||(24285696-24285790)
chr2 (189-283)||(42249426-42249520)
chr2 (238-315)||(18989312-18989389)
chr2 (189-283)||(34070575-34070669)
[»] chr5 (20 HSPs)
chr5 (1-189)||(22042559-22042746)
chr5 (189-335)||(29186197-29186343)
chr5 (188-324)||(20398565-20398701)
chr5 (189-324)||(20372843-20372978)
chr5 (189-334)||(1728079-1728224)
chr5 (188-334)||(43597966-43598112)
chr5 (188-334)||(43603458-43603604)
chr5 (188-334)||(43608950-43609096)
chr5 (189-334)||(24956766-24956911)
chr5 (189-334)||(24965229-24965374)
chr5 (189-324)||(23350006-23350141)
chr5 (188-334)||(28843939-28844085)
chr5 (189-334)||(28852550-28852695)
chr5 (189-321)||(31410890-31411022)
chr5 (189-316)||(31421789-31421916)
chr5 (189-300)||(19223555-19223666)
chr5 (268-314)||(17638318-17638364)
chr5 (268-314)||(23028007-23028053)
chr5 (267-313)||(23037923-23037969)
chr5 (455-501)||(19223811-19223857)
[»] scaffold0156 (1 HSPs)
scaffold0156 (189-324)||(35286-35421)
[»] chr7 (12 HSPs)
chr7 (189-334)||(10439937-10440082)
chr7 (189-334)||(4952317-4952462)
chr7 (189-334)||(13831500-13831645)
chr7 (189-334)||(13839531-13839676)
chr7 (189-334)||(18304312-18304457)
chr7 (189-334)||(12978455-12978600)
chr7 (189-314)||(21662962-21663088)
chr7 (189-283)||(30244775-30244869)
chr7 (189-250)||(4941581-4941642)
chr7 (189-283)||(30255413-30255506)
chr7 (260-315)||(1955691-1955746)
chr7 (189-283)||(30245568-30245662)
[»] chr4 (14 HSPs)
chr4 (189-334)||(27343611-27343756)
chr4 (189-334)||(4523600-4523745)
chr4 (189-334)||(12996476-12996621)
chr4 (189-324)||(8094212-8094347)
chr4 (189-324)||(8103018-8103153)
chr4 (189-335)||(21532224-21532369)
chr4 (189-317)||(52295604-52295732)
chr4 (189-314)||(12428418-12428543)
chr4 (189-315)||(33188766-33188891)
chr4 (189-262)||(10638328-10638400)
chr4 (289-334)||(10638406-10638451)
chr4 (244-283)||(12402907-12402946)
chr4 (189-314)||(3424331-3424454)
chr4 (268-313)||(25249599-25249644)
[»] chr3 (23 HSPs)
chr3 (189-334)||(8154564-8154709)
chr3 (188-334)||(50824351-50824497)
chr3 (188-334)||(50851363-50851509)
chr3 (189-334)||(41006556-41006701)
chr3 (189-334)||(41015336-41015481)
chr3 (189-324)||(14538534-14538670)
chr3 (188-335)||(28470137-28470283)
chr3 (189-334)||(27341254-27341400)
chr3 (189-334)||(2211239-2211384)
chr3 (189-324)||(9525364-9525499)
chr3 (189-324)||(9555038-9555173)
chr3 (189-314)||(17933655-17933780)
chr3 (189-314)||(17919199-17919324)
chr3 (191-315)||(43470492-43470615)
chr3 (189-314)||(16816145-16816268)
chr3 (189-253)||(17628265-17628329)
chr3 (189-283)||(21186747-21186841)
chr3 (193-283)||(18349560-18349650)
chr3 (189-284)||(18039011-18039106)
chr3 (189-283)||(30447-30541)
chr3 (189-283)||(8197667-8197761)
chr3 (268-315)||(31276593-31276640)
chr3 (274-315)||(16288692-16288733)
[»] chr1 (14 HSPs)
chr1 (189-334)||(3432810-3432955)
chr1 (189-334)||(31539954-31540099)
chr1 (189-334)||(31548523-31548668)
chr1 (189-324)||(32137684-32137819)
chr1 (189-334)||(35103984-35104129)
chr1 (189-324)||(41746622-41746758)
chr1 (189-314)||(29221429-29221553)
chr1 (189-314)||(44320132-44320257)
chr1 (262-314)||(28457629-28457681)
chr1 (231-313)||(51058330-51058411)
chr1 (189-283)||(21498869-21498963)
chr1 (261-314)||(8241438-8241491)
chr1 (268-312)||(13462775-13462819)
chr1 (268-313)||(22460026-22460071)
[»] chr6 (17 HSPs)
chr6 (189-324)||(33298085-33298219)
chr6 (189-318)||(15391547-15391676)
chr6 (188-334)||(5004060-5004206)
chr6 (189-324)||(13825703-13825838)
chr6 (189-324)||(30824459-30824594)
chr6 (188-334)||(35091596-35091742)
chr6 (188-324)||(25550294-25550430)
chr6 (189-334)||(11279837-11279982)
chr6 (189-317)||(5994699-5994827)
chr6 (191-334)||(25991852-25991995)
chr6 (189-334)||(25506461-25506606)
chr6 (189-334)||(23925335-23925481)
chr6 (248-325)||(26526631-26526708)
chr6 (189-280)||(13490193-13490284)
chr6 (188-241)||(5489132-5489185)
chr6 (189-281)||(11053702-11053794)
chr6 (256-315)||(14894939-14894998)
[»] scaffold0111 (1 HSPs)
scaffold0111 (189-334)||(33035-33180)
[»] scaffold0209 (1 HSPs)
scaffold0209 (189-334)||(4-149)
[»] scaffold0083 (1 HSPs)
scaffold0083 (189-317)||(15813-15941)
[»] scaffold0002 (1 HSPs)
scaffold0002 (189-324)||(121228-121363)
[»] scaffold0497 (1 HSPs)
scaffold0497 (189-315)||(10993-11119)
[»] scaffold0632 (1 HSPs)
scaffold0632 (189-317)||(4390-4518)
[»] scaffold0016 (1 HSPs)
scaffold0016 (189-324)||(23464-23600)
[»] scaffold0173 (1 HSPs)
scaffold0173 (189-324)||(859-994)
[»] scaffold0039 (1 HSPs)
scaffold0039 (189-300)||(40787-40898)
[»] scaffold0431 (1 HSPs)
scaffold0431 (189-314)||(139-264)
[»] scaffold0170 (1 HSPs)
scaffold0170 (189-315)||(7129-7255)
[»] scaffold0222 (1 HSPs)
scaffold0222 (189-314)||(20422-20547)
[»] scaffold0027 (2 HSPs)
scaffold0027 (257-335)||(65622-65701)
scaffold0027 (461-501)||(65470-65510)
[»] scaffold0315 (1 HSPs)
scaffold0315 (259-315)||(10595-10651)
[»] scaffold0015 (1 HSPs)
scaffold0015 (189-284)||(192528-192623)
[»] scaffold0290 (1 HSPs)
scaffold0290 (238-315)||(15760-15837)
[»] scaffold0991 (1 HSPs)
scaffold0991 (189-282)||(345-438)
[»] scaffold0048 (2 HSPs)
scaffold0048 (289-322)||(7587-7620)
scaffold0048 (188-261)||(7622-7695)
[»] scaffold0044 (2 HSPs)
scaffold0044 (189-282)||(81758-81851)
scaffold0044 (189-283)||(65509-65603)
[»] scaffold0007 (1 HSPs)
scaffold0007 (268-315)||(61371-61418)
[»] scaffold0863 (1 HSPs)
scaffold0863 (189-283)||(343-437)
[»] scaffold1380 (1 HSPs)
scaffold1380 (274-315)||(556-597)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 189 - 353
Target Start/End: Complemental strand, 17683861 - 17683697
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  17683861 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaa 17683762  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 353  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17683761 agaagttactttgaagtacctcattttttattccgagtcggacccttctctttcccattattttc 17683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 189 - 353
Target Start/End: Complemental strand, 17664705 - 17664541
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||    
T  17664705 tgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaa 17664606  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 353  Q
    ||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  17664605 agaagttactttgaagtacctcattttttattccgagtcggacccttctctttcccattattttc 17664541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 39837627 - 39837482
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  39837627 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 39837528  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  39837527 agaggttactttgaagtacctcattttttattccgagtcggaccct 39837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 187 - 323
Target Start/End: Complemental strand, 4839849 - 4839713
Alignment:
Q  187 tatgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac 286  Q
    ||||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4839849 tatgtcataccccaaattttgaccgcttttctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgac 4839750  T
Q  287 aaagaggttactttgaagtacctcattttttattccg 323  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  4839749 aaagaagttactttgaagtacctcatttttgattccg 4839713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 17973565 - 17973700
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  17973565 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 17973664  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  17973665 agaggttactttgaagtacctcattttttattccga 17973700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 188 - 318
Target Start/End: Complemental strand, 39845671 - 39845541
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  39845671 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgaca 39845572  T
Q  288 aagaggttactttgaagtacctcatttttta 318  Q
    |||||||||||||||||||||||||||||||    
T  39845571 aagaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 30938282 - 30938427
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  30938282 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30938381  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  30938382 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 30938427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 25579877 - 25579742
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  25579877 tgtcataccctaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 25579778  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  25579777 agaggttactttgaagtacctcattttttattccga 25579742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 1407138 - 1406993
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  1407138 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaa 1407039  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1407038 agaggttactttgaagtacctcattttttattccgagtcggaccct 1406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 26873669 - 26873541
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||    
T  26873669 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaa 26873570  T
Q  289 agaggttactttgaagtacctcatttttt 317  Q
    |||||||||||| |||||||| |||||||    
T  26873569 agaggttactttaaagtaccttatttttt 26873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 189 - 317
Target Start/End: Complemental strand, 26876119 - 26875991
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||    
T  26876119 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaa 26876020  T
Q  289 agaggttactttgaagtacctcatttttt 317  Q
    |||||||||||| || |||||||||||||    
T  26876019 agaggttactttaaaatacctcatttttt 26875991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 450 - 501
Target Start/End: Complemental strand, 17664444 - 17664393
Alignment:
Q  450 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 501  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17664444 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17664393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 450 - 501
Target Start/End: Complemental strand, 17683600 - 17683549
Alignment:
Q  450 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 501  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17683600 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17683549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 4582204 - 4582298
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    |||||||||| |||||||||||||||||||||||  || |  ||||| ||| || |||||||  ||| ||| | |||| ||| ||||||||||||    
T  4582204 tgtcataccttaaattttgaccacttttctctatttttacacattttgttcatacttttaaaaccggaaatgtccgtcattttagacgaaatttc 4582298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 187 - 353
Target Start/End: Complemental strand, 20372380 - 20372214
Alignment:
Q  187 tatgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac 286  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  20372380 tatgtcataccccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgac 20372281  T
Q  287 aaagaggttactttgaagtacctca-ttttttattccgaatcagacccttctctttcccattattttc 353  Q
    ||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  20372280 aaa-aggttactttgaagtacctcatttttttattccgagtcggacccttctctttcccattattttc 20372214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 189 - 353
Target Start/End: Original strand, 20621518 - 20621682
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  20621518 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaa 20621617  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagacccttctctttcccattattttc 353  Q
    ||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  20621618 agatgttactttgaagtacctcattttttattctgagtcagacccttctctttcccattattttc 20621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 14582925 - 14583070
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  14582925 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 14583024  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  14583025 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 14583070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 15944622 - 15944477
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  15944622 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15944523  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  15944522 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 15944477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 15953137 - 15952992
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  15953137 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 15953038  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  15953037 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 15952992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 35138593 - 35138738
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35138593 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35138692  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35138693 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35138738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 35146929 - 35147074
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  35146929 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 35147028  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35147029 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 41233909 - 41233764
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41233909 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41233810  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41233809 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41233764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 38168422 - 38168277
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||  |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  38168422 tgtcatactccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 38168323  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  38168322 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 38168277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 42565994 - 42565849
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  42565994 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42565895  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  42565894 agaggttactttgaagtacctcattttttattccgagtcggaccct 42565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 42574618 - 42574473
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  42574618 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 42574519  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  42574518 agaggttactttgaagtacctcattttttattccgagtcggaccct 42574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 35037884 - 35038001
Alignment:
Q  217 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 316  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  317 tattccgaatcagaccct 334  Q
    |||||||| |||| ||||    
T  35037984 tattccgagtcaggccct 35038001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 44372705 - 44372814
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  44372705 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44372804  T
Q  289 agaggttact 298  Q
    ||||||||||    
T  44372805 agaggttact 44372814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 44388616 - 44388725
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  44388616 tgtcataccccaaattttgaccacttttttctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaa 44388715  T
Q  289 agaggttact 298  Q
    ||||||||||    
T  44388716 agaggttact 44388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 17687463 - 17687369
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17687463 tgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 17687369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 25483601 - 25483712
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||     
T  25483601 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25483700  T
Q  289 agaggttacttt 300  Q
    ||||||||||||    
T  25483701 agaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 25491207 - 25491318
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||     
T  25491207 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacag 25491306  T
Q  289 agaggttacttt 300  Q
    ||||||||||||    
T  25491307 agaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 20621788 - 20621839
Alignment:
Q  450 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621788 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 20621839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 35303737 - 35303862
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||| | ||||||||    || ||  |||||||| |||||| |||| |  ||| ||||||||||||||||||||||||  ||     
T  35303737 tgtcataccccaaattttgactatttttctctgattttaccccttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcag 35303836  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    |||||||| |||||||||||||||||    
T  35303837 agaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 27606710 - 27606616
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    |||||||||  ||||||||||| ||||||||||||  ||  | |||||||||||| |||||||| |||||||||| ||||| ||||||||||||||    
T  27606710 atgtcatactccaaattttgactacttttctctatttttatcaattttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttc 27606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 24285696 - 24285790
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| |||||||||||||||||||| |||  || |  ||||| |||||| |||||||   || ||||| |||||||| ||||||||||||    
T  24285696 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaactggaaatttccgtcgtttaagacgaaatttc 24285790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 42249520 - 42249426
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||  |||||| ||||||| |||  ||| | |||||||| ||||||||||||    
T  42249520 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaatcgaaaatgtccgtcgttttagacgaaatttc 42249426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  238 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    |||| ||||||||| |||||||||| ||||  |||||||||||| |   | |||||||||||| ||||||||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 34070669 - 34070575
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| |||||||||| |||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||| |||||||    
T  34070669 tgtcataccccaaattttgatcacttttctctatttttacacattttgttcgtacttttaaaaccggtaatgtccgtcgttttagacaaaatttc 34070575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 9e-62; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 22042559 - 22042746
Alignment:
Q  1 cattgaagaagtataacaacactgcagagtagtaaaacaaaataaaattagcagttaggaaaactgaaaatatagaatacctgatatggaagatgtacag 100  Q
    ||||||||||||||||||||| |||||||||||| ||||| |    |  ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22042559 cattgaagaagtataacaacagtgcagagtagtataacaacagtgcag-agcagttaggaaagctgaaaatatagaatacctgatatggaagatgtacag 22042657  T
Q  101 tttcaaaacctcccagaacttgtcttttaagcacatcacgatatccagccatttcaagtggaaagagtagttaaagatgatgtagttat 189  Q
    ||||||||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22042658 tttcaaaacctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttat 22042746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 29186343 - 29186197
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29186343 tgtcataccccaaattttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 29186244  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccctt 335  Q
    ||||||||||||||||| |||||||||||||||||| || |||||||    
T  29186243 agaggttactttgaagtgcctcattttttattccgagtcggaccctt 29186197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 188 - 324
Target Start/End: Complemental strand, 20398701 - 20398565
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20398701 atgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgaca 20398602  T
Q  288 aagaggttactttgaagtacctcattttttattccga 324  Q
     ||||||||||||||||||||||||||||||||||||    
T  20398601 gagaggttactttgaagtacctcattttttattccga 20398565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 20372978 - 20372843
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  20372978 tgtcataccccaaattttgaccacttttctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacag 20372879  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  20372878 agaggttactttgaagtacctcattttttattccga 20372843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 1728224 - 1728079
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||    
T  1728224 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaa 1728125  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  1728124 agaggttactttgaagtacctcattttttattccgagtcggaccct 1728079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 43598112 - 43597966
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43598112 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43598013  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43598012 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 43603604 - 43603458
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43603604 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43603505  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43603504 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 43609096 - 43608950
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   ||    
T  43609096 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggca 43608997  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  43608996 aagaggttactttgaagtacctcattttttattccgagtcggaccct 43608950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 24956911 - 24956766
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  24956911 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24956812  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  24956811 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 24956766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 24965374 - 24965229
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  24965374 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 24965275  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  24965274 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 24965229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 23350141 - 23350006
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||| ||||||||||  || || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||    
T  23350141 tgtcataccccaaattttgaccatttttctctatttttacccattttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaa 23350042  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  23350041 agaggttactttgaagtacctcattttttattccga 23350006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 28843939 - 28844085
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   ||    
T  28843939 atgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggca 28844038  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  28844039 aagaggttactttgaagtacctcattttttattccgagtcggaccct 28844085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 28852550 - 28852695
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  28852550 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 28852649  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  28852650 agaggttactttgaagtacctcattttttattccgagtcggaccct 28852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 31410890 - 31411022
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||| ||||||||| ||  || ||||||||||||||||||||||  |||||||||||||||| | |||||||||| ||||    
T  31410890 tgtcataccccaaattttgaccacatttctctattctaacccattttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaa 31410989  T
Q  289 agaggttactttgaagtacctcattttttattc 321  Q
    |||||||||||||||||||||||||||||||||    
T  31410990 agaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 31421789 - 31421916
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||||||||  ||||||||||||||||||||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||    
T  31421789 tgtcatacccaaaattttgaccacttttctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaa 31421888  T
Q  289 agaggttactttgaagtacctcattttt 316  Q
    ||| ||||||||||||||||||||||||    
T  31421889 agatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 19223555 - 19223666
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||| ||||||||||||||| ||||| ||||||||||||| ||||| || |||     
T  19223555 tgtcataccccaaattttgaccacttttctctattcttatccattttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacag 19223654  T
Q  289 agaggttacttt 300  Q
    ||||||||||||    
T  19223655 agaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 17638318 - 17638364
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 314  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  17638318 tttcaaacgaaatttcgacagagaggttactttgaagtacctcattt 17638364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 314  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  267 gtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 313  Q
    |||||||||||||||||  || |||||||||||||||||||||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 19223811 - 19223857
Alignment:
Q  455 caatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 501  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||    
T  19223811 caatgttgtcaataagtccgaaagttttcagcaagggtccaaatttc 19223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 116; Significance: 9e-59; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 35421 - 35286
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35421 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 35322  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||||||||||||||||||||||||||||||||||||    
T  35321 agaggttactttgaagtacctcattttttattccga 35286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 10439937 - 10440082
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     
T  10439937 tgtcataccccaaattttgaccacttttctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 10440036  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||    
T  10440037 agaggttactttaaagtacctcattttttattccgagtcagaccct 10440082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 4952462 - 4952317
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||    
T  4952462 tgtcatacctcaaattttgaccacttttatctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaa 4952363  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4952362 agaggttactttgaagtacctcattttttattccgagtcggaccct 4952317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 13831500 - 13831645
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||||||||  |||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13831500 tgtcataccctaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13831599  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  13831600 agaggttactttgaagtacctcattttttattccgagtcggaccct 13831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 13839531 - 13839676
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  13839531 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 13839630  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  13839631 agaggttactttgaagtacctcattttttattccgagtcggaccct 13839676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 18304457 - 18304312
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  18304457 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 18304358  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||| ||| || ||||||    
T  18304357 agaggttactttgaagtacctcattttttatttcgagtcggaccct 18304312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 12978455 - 12978600
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  12978455 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 12978554  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  12978555 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 12978600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 21663088 - 21662962
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtattttt-aaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    ||||||||| |||||||||| ||||||| ||| |  || || ||||||||||||||||| |||| || || | |||||||||| ||||||||||||||||    
T  21663088 tgtcataccccaaattttgatcacttttatctgtttttacccattttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaaca 21662989  T
Q  288 aagaggttactttgaagtacctcattt 314  Q
      |||||||||||||||||||||||||    
T  21662988 gggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 30244775 - 30244869
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||||||||||||||||||||||||||||  ||  | ||||||||||||||||||||||| ||||||||||| ||||||| || ||||||    
T  30244775 tgtcatacctcaaattttgaccacttttctctatttttatccattttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttc 30244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 4941642 - 4941581
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaa 250  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  4941642 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaa 4941581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 30255413 - 30255506
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||||||| | ||| | ||||||||| ||||||| || ||||||    
T  30255413 tgtcatacc-caaattttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttc 30255506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  260 tttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    |||||||||||||||| |||||||  || |||||||||||||||| ||||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 30245568 - 30245662
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    |||||||||  || ||||||||||||||||||||  ||  | ||||||||||||||||| | ||| | ||||||||| ||||||| || ||||||    
T  30245568 tgtcatacccaaatttttgaccacttttctctatttttatccattttattcgtatttttcatgtcagaaattttcgttgtttcagtcgtaatttc 30245662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 27343756 - 27343611
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||  || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27343756 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacag 27343657  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  27343656 agaggttactttgaagtacctcattttttattccgagtcggaccct 27343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 4523745 - 4523600
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4523745 tgtcataccccaaattttgaccactttcctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 4523646  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  4523645 agaggttactttgaagtacctcattttttattccgagtcggaccct 4523600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 12996476 - 12996621
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||   |     
T  12996476 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtag 12996575  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||    
T  12996576 agaggttactttgaagtacctcattttttattccgagtcagtccct 12996621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 8094347 - 8094212
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  8094347 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8094248  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    |||||||||||||||||||||||||||| |||||||    
T  8094247 agaggttactttgaagtacctcatttttgattccga 8094212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 8103153 - 8103018
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  8103153 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 8103054  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    |||||||||||||||||||||||||||| |||||||    
T  8103053 agaggttactttgaagtacctcatttttgattccga 8103018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 21532369 - 21532224
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  21532369 tgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaa 21532270  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccctt 335  Q
    | || |||||||||||||||||||||||||||| || || |||||||    
T  21532269 a-agattactttgaagtacctcattttttattctgagtcggaccctt 21532224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 52295604 - 52295732
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||     
T  52295604 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcag 52295703  T
Q  289 agaggttactttgaagtacctcatttttt 317  Q
    |||| ||||||||||||||||||||||||    
T  52295704 agagattactttgaagtacctcatttttt 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 12428543 - 12428418
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || |    
T  12428543 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 12428444  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    |||| |||||||||||||||||||||    
T  12428443 agagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 33188766 - 33188891
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||| |||||| |||||  ||  |  ||||||| ||||||||||||  | ||||||||||||||||||||||||||||| |||    
T  33188766 tgtcataccccaaattttgacaactttt-tctatttttatcctttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttcagcaa 33188864  T
Q  289 agaggttactttgaagtacctcatttt 315  Q
      ||||||||||||| |||||||||||    
T  33188865 gaaggttactttgaattacctcatttt 33188891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 10638328 - 10638400
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaatttt 262  Q
    ||||||||| ||||||||||||||||||||||||  || || |||||||||||| |||||||||||||||||||    
T  10638328 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgta-ttttaaagtcgggaatttt 10638400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 10638406 - 10638451
Alignment:
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  10638406 agaggttactttgaagtacctcattttttattccgagtcggaccct 10638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 244 - 283
Target Start/End: Original strand, 12402907 - 12402946
Alignment:
Q  244 ttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttc 12402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 3424331 - 3424454
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||| || |||||||||   || ||  |||||||| || ||| |||| |  |||  ||||||||| |||||||||||||  ||     
T  3424331 tgtcataccccaaattttgatcatttttctctaattttaccccttttattcttactttaaaagccaagaaagttcgtcgttccagacgaaatttcggca- 3424429  T
Q  289 agaggttactttgaagtacctcattt 314  Q
     |||||||||||||||||||||||||    
T  3424430 -gaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 25249644 - 25249599
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 313  Q
    ||||| ||||||||||||||  |||||||||||| |||||||||||    
T  25249644 tttcaaacgaaatttcaacagggaggttactttggagtacctcatt 25249599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 8154709 - 8154564
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  8154709 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 8154610  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  8154609 agaggttactttgaagtacctcattttttattccgagtcggaccct 8154564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 50824351 - 50824497
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  50824351 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50824450  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     |||||||||||||||||||||||||||||||||||| || ||||||    
T  50824451 gagaggttactttgaagtacctcattttttattccgagtcggaccct 50824497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 50851509 - 50851363
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||    
T  50851509 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggca 50851410  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     |||||||||||||||||||||||||||||||||||| || ||||||    
T  50851409 gagaggttactttgaagtacctcattttttattccgagtcggaccct 50851363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 41006556 - 41006701
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41006556 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41006655  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41006656 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41006701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 41015336 - 41015481
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  41015336 tgtcataccccaaattttgaccatttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 41015435  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  41015436 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 41015481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 14538670 - 14538534
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-a 287  Q
    ||||||||| |||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||  | |    
T  14538670 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 14538571  T
Q  288 aagaggttactttgaagtacctcattttttattccga 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  14538570 aagaggttactttgaagtacctcattttttattccga 14538534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 188 - 335
Target Start/End: Complemental strand, 28470283 - 28470137
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||    
T  28470283 atgtcataccccaaattttgaccacttttctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca 28470184  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccctt 335  Q
    || || ||||| |||||||||||||||||||||| || || |||||||    
T  28470183 aa-agattactatgaagtacctcattttttattctgagtcggaccctt 28470137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 27341400 - 27341254
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||     
T  27341400 tgtcataccccaaattttgaccacttttctctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcag 27341301  T
Q  289 agaggttactttgaagtacctcatt-ttttattccgaatcagaccct 334  Q
    | ||||||||||||||||||||||| ||||||||||| |||| ||||    
T  27341300 aaaggttactttgaagtacctcatttttttattccgagtcaggccct 27341254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 2211239 - 2211384
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||    
T  2211239 tgtcataccctaaattttgaccacttttctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaa 2211338  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    ||||| || ||| || |||||||||||||||||||| |||| ||||    
T  2211339 agagggtattttaaaatacctcattttttattccgagtcaggccct 2211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 9525499 - 9525364
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||     
T  9525499 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9525400  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    | |||||||||| || ||||||||||||||||||||    
T  9525399 aaaggttactttaaaatacctcattttttattccga 9525364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 9555173 - 9555038
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||| ||||||||||||| ||| || |||||| |||||||||||||||||||||||||||| |||| ||||||||||||  ||     
T  9555173 tgtcataccccaaattttgatcacttttctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcag 9555074  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    | |||||||||| || ||||||||||||||||||||    
T  9555073 aaaggttactttaaaatacctcattttttattccga 9555038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 17933655 - 17933780
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||| ||||||||||  || || ||||||||||||||||||||||||| |||||||||  ||||||||||||||||  |      
T  17933655 tgtcataccccaaattttgaccaattttctctatttttacccattttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcgg 17933754  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    ||||||||||||||||||||||||||    
T  17933755 agaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 17919199 - 17919324
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||||||||||| ||  |||||||||  ||||||||||||||||  |      
T  17919199 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcgg 17919298  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    |||||||||||| |||||||||||||    
T  17919299 agaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 191 - 315
Target Start/End: Complemental strand, 43470615 - 43470492
Alignment:
Q  191 tcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaag 290  Q
    ||||||| ||||||||||| |||||| |||||  || ||  |||||||||||||||||||| || |||||||  |||||||||||||||||||  || ||    
T  43470615 tcataccccaaattttgactactttt-tctatttttaccctttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagag 43470517  T
Q  291 aggttactttgaagtacctcatttt 315  Q
    |||||||||||||||||||||||||    
T  43470516 aggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 16816268 - 16816145
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||||||||||||||||||| ||| |||||||||  |||||||||||||||  ||      
T  16816268 tgtcatacc-caaattttgaccacttttctctatttttactcattttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacgg 16816170  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    ||||| ||||||||||||||||||||    
T  16816169 agagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 17628265 - 17628329
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtc 253  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  17628265 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtc 17628329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 21186747 - 21186841
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| |||||||||||||||||| ||| |  ||  | |||||||||||| |||||||| || |||||||||| |||||| ||||||||||    
T  21186747 tgtcataccccaaattttgaccacttttatctgtttttatccattttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttc 21186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 283
Target Start/End: Original strand, 18349560 - 18349650
Alignment:
Q  193 atacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||| ||||||||||| ||||||||||||  || |  |||||||||||| ||||||| |||| ||| | |||||||| ||||||||||||    
T  18349560 ataccccaaattttgacaacttttctctatttttacacattttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttc 18349650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 18039011 - 18039106
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttca 284  Q
    ||||||||| |||||||||||||||||||||  |  || || |||||||||||||||| || | || |||   |||| ||||||||||||||||||    
T  18039011 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgttgtttcagacgaaatttca 18039106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 30541 - 30447
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| || ||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  30541 tgtcataccccaaattttgaccacttttctctatttttacacattttgtttgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 30447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 8197761 - 8197667
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||| |||||||    
T  8197761 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacaaaatttc 8197667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 31276593 - 31276640
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  31276593 tttcaaacgaaatttcgacaagaaggttactttgaagtacctcatttt 31276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  274 acgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 3432955 - 3432810
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  3432955 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaa 3432856  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  3432855 agaggttactttgaagtacctcattttttattccgagtcggaccct 3432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 31539954 - 31540099
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31539954 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31540053  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  31540054 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 31540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 31548523 - 31548668
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31548523 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 31548622  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  31548623 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 31548668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 32137819 - 32137684
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||| |||| |||||||||| ||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32137819 tgtcttaccccaaattttgatcacttttctctattcttatccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 32137720  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    | | ||||||||||||||||||||||||||||||||    
T  32137719 ataagttactttgaagtacctcattttttattccga 32137684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 35104129 - 35103984
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||    
T  35104129 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaa 35104030  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
     ||||||||||||||||||||||||||| ||||||| || ||||||    
T  35104029 ggaggttactttgaagtacctcatttttgattccgagtcggaccct 35103984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 41746758 - 41746622
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-a 287  Q
    ||||||| | |||||||||||||||||| ||||| |||  | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | |    
T  41746758 tgtcatatcccaaattttgaccacttttatctattcttatccattttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaa 41746659  T
Q  288 aagaggttactttgaagtacctcattttttattccga 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  41746658 aagaggttactttgaagtacctcattttttattccga 41746622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 29221553 - 29221429
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||| ||||||||||||  || || ||||||||||||||||||||||||| ||||||||   ||||||||||||||||  ||     
T  29221553 tgtcataccccaaattttgactacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggcag 29221454  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    ||||| || |||||| ||||||||||    
T  29221453 agagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 44320257 - 44320132
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||  |  || || |||||||||||||||| || | || |||   ||||||||||||||||||||||| ||     
T  44320257 tgtcataccccaaattttgaccacttttctcgctttttacccattttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcag 44320158  T
Q  289 agaggttactttgaagtacctcattt 314  Q
     ||||||||||  |||||||||||||    
T  44320157 ggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 28457629 - 28457681
Alignment:
Q  262 tcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 314  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  28457629 tcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacatcattt 28457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 313
Target Start/End: Complemental strand, 51058411 - 51058330
Alignment:
Q  231 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 313  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||||||||||| || | ||| || |||||| |||||||||    
T  51058411 attttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttcagcagaaagg-tattttgaaatacctcatt 51058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 21498963 - 21498869
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||  |||||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  21498963 tgtcataccccaaattttgaccacttttctctatttttacacatttcgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 21498869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 8241491 - 8241438
Alignment:
Q  261 ttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 314  Q
    |||||||||||||||||||||||   | |||||||||||| |||||||||||||    
T  8241491 ttcgtcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 13462775 - 13462819
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcat 312  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  13462775 tttcagacgaaatttggataaagaggttactttgaagtacctcat 13462819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 22460026 - 22460071
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 313  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||||||    
T  22460026 tttcaaacgaaatttcgacagagaggttactttggagtacctcatt 22460071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 33298085 - 33298219
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33298085 tgtcataccccaacttttgaccacttttctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaa 33298184  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||| ||||||||||||||||||||||||||||||||    
T  33298185 aga-gttactttgaagtacctcattttttattccga 33298219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 318
Target Start/End: Complemental strand, 15391676 - 15391547
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  15391676 tgtcatatcccaaattttgaccacttttctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaa 15391577  T
Q  289 agaggttactttgaagtacctcatttttta 318  Q
    ||||||||||||||||||||||||||||||    
T  15391576 agaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 188 - 334
Target Start/End: Original strand, 5004060 - 5004206
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  5004060 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggca 5004159  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    | ||||||||||||||||||||||||||| ||||||| || ||||||    
T  5004160 aggaggttactttgaagtacctcatttttgattccgagtcggaccct 5004206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 13825703 - 13825838
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||     
T  13825703 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacag 13825802  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    |||||||||||||||||||||||||||| |||||||    
T  13825803 agaggttactttgaagtacctcatttttgattccga 13825838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 30824594 - 30824459
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||    
T  30824594 tgtcataccccaaattttgaccacttttctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaa 30824495  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    |||||||||||||||||||||||||||| |||||||    
T  30824494 agaggttactttgaagtacctcatttttgattccga 30824459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 35091742 - 35091596
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||   ||    
T  35091742 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggca 35091643  T
Q  288 aagaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    | ||||||||||||||||||||||||||||||| |||||| ||||||    
T  35091642 aggaggttactttgaagtacctcattttttatttcgaatcggaccct 35091596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 188 - 324
Target Start/End: Original strand, 25550294 - 25550430
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||    
T  25550294 atgtcataccccaaattttgaccacttttctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggca 25550393  T
Q  288 aagaggttactttgaagtacctcattttttattccga 324  Q
     ||||||||||||||||||||||||||||||||||||    
T  25550394 gagaggttactttgaagtacctcattttttattccga 25550430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 11279837 - 11279982
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  11279837 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 11279936  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  11279937 agaggttactttgaagtacctcattttttattccgagtcggaccct 11279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 5994699 - 5994827
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||   |||    
T  5994699 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaa 5994798  T
Q  289 agaggttactttgaagtacctcatttttt 317  Q
    |||||||||||||||||||||||||||||    
T  5994799 agaggttactttgaagtacctcatttttt 5994827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 191 - 334
Target Start/End: Original strand, 25991852 - 25991995
Alignment:
Q  191 tcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaag 290  Q
    ||||||| ||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||   | ||    
T  25991852 tcataccccaaatgttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagag 25991951  T
Q  291 aggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    ||||||||||||||||||||||||||||||| || || ||||||    
T  25991952 aggttactttgaagtacctcattttttattcagagtcggaccct 25991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 25506606 - 25506461
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||     
T  25506606 tgtcataccccaaattttgatcacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcag 25506507  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||| || |||||||||||| ||||||| |||| ||||    
T  25506506 agaggttactttaaaatacctcatttttgattccgagtcaggccct 25506461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 23925335 - 23925481
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| || |||  |||||||||||   |     
T  23925335 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtag 23925434  T
Q  289 agaggttactttgaagtacctcatttttt-attccgaatcagaccct 334  Q
    ||| ||||||||||||||||||||||||| ||||||| |||| ||||    
T  23925435 agatgttactttgaagtacctcattttttgattccgagtcaggccct 23925481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 26526708 - 26526631
Alignment:
Q  248 aaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaa 325  Q
    ||||||||||||||||||||||||||||||||| ||  || || |||||||||||| ||||||||||||  |||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcatttttggttccgaa 26526631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 13490193 - 13490284
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaat 280  Q
    ||||||||| ||||||||||||||||||||||||  ||  | ||||||||||||| | ||||  |||||||||||||  |||||||| ||||    
T  13490193 tgtcataccccaaattttgaccacttttctctatttttatccattttattcgtatctgtaaaaccgggaattttcgttatttcagacaaaat 13490284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 5489185 - 5489132
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgt 241  Q
    |||||||||| |||||||||||||||||||||||| ||| || |||||||||||    
T  5489185 atgtcataccccaaattttgaccacttttctctattcttacccattttattcgt 5489132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 11053702 - 11053794
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcc-tattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatt 281  Q
    ||||||||| |||||||||||||||||| |||||  || ||  ||||||||||||||||||||  |  ||||||||||  ||||||||||||||    
T  11053702 tgtcataccccaaattttgaccacttttttctatttttaccaaattttattcgtatttttaaa-accagaattttcgttatttcagacgaaatt 11053794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 14894939 - 14894998
Alignment:
Q  256 gaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    ||||||| |||| ||||||||| |||||  ||||||  ||||||||||||||||||||||    
T  14894939 gaatttttgtcgcttcagacgatatttcggcaaagaaattactttgaagtacctcatttt 14894998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 189 - 334
Target Start/End: Original strand, 33035 - 33180
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33035 tgtcataccccaaattttgaccacttttctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaa 33134  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||    
T  33135 agaggttactttaaagtacctcattttttattccgagtcggaccct 33180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 149 - 4
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||| |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||    
T  149 tgtcataccccaaattttgaccactttcctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaa 50  T
Q  289 agaggttactttgaagtacctcattttttattccgaatcagaccct 334  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  49 agaggttactttgaagtacctcattttttattccgagtcggaccct 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 15813 - 15941
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||  || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||     
T  15813 tgtcataccccaaattttgaccacttttctctatttttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 15912  T
Q  289 agaggttactttgaagtacctcatttttt 317  Q
    |||||||||||||||||||||||||||||    
T  15913 agaggttactttgaagtacctcatttttt 15941  T

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Target: scaffold0002 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 121228 - 121363
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||   |     
T  121228 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtag 121327  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    ||||||||||||||||||  |||||||| |||||||    
T  121328 agaggttactttgaagtaaatcatttttgattccga 121363  T

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Target: scaffold0497 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 10993 - 11119
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||  ||     
T  10993 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcag 11092  T
Q  289 agaggttactttgaagtacctcatttt 315  Q
    |||||||||||||||||||||||||||    
T  11093 agaggttactttgaagtacctcatttt 11119  T

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Target: scaffold0632 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 4390 - 4518
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||   |||||||||| ||| || ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||     
T  4390 tgtcataccccaaattttgacattttttctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacag 4489  T
Q  289 agaggttactttgaagtacctcatttttt 317  Q
    |||||||||||||||||||||||||||||    
T  4490 agaggttactttgaagtacctcatttttt 4518  T

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Target: scaffold0016 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 189 - 324
Target Start/End: Original strand, 23464 - 23600
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttt-taaagtcgggaattttcgtcgtttcagacgaaatttcaaca 287  Q
    ||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||||| || |||| |||||||||||   |    
T  23464 tgtcataccccaaattttgaccacttttctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggta 23563  T
Q  288 aagaggttactttgaagtacctcattttttattccga 324  Q
     |||||||||||||||||||||||||||| |||||||    
T  23564 gagaggttactttgaagtacctcatttttgattccga 23600  T

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Target: scaffold0173 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 994 - 859
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||  ||||||||| ||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||     
T  994 tgtcataccccaaattttgaccagctttctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcag 895  T
Q  289 agaggttactttgaagtacctcattttttattccga 324  Q
    | ||||||||||||| |||||||||||| |||||||    
T  894 aaaggttactttgaaatacctcatttttgattccga 859  T

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Target: scaffold0039 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 40898 - 40787
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||||||| |||  | |||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||    
T  40898 tgtcataccccaaattttgaccacttttctctattcttatccattttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaa 40799  T
Q  289 agaggttacttt 300  Q
    ||||||||||||    
T  40798 agaggttacttt 40787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 139 - 264
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| ||||||||||||||||||||||||   | || ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || |    
T  139 tgtcataccccaaattttgaccacttttctctatttctacccattttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacga 238  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    |||| |||||||||||||||||||||    
T  239 agagtttactttgaagtacctcattt 264  T

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Target: scaffold0170 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 315
Target Start/End: Complemental strand, 7255 - 7129
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    |||||||||  ||||||||||||||||||||| |  || || |||||||| ||| |||||||| || |||||||||| |||||||||||||||||   |     
T  7255 tgtcataccctaaattttgaccacttttctctgtttttacccattttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggag 7156  T
Q  289 agaggttactttgaagtacctcatttt 315  Q
      |||||||||||||||||||||||||    
T  7155 gaaggttactttgaagtacctcatttt 7129  T

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Target: scaffold0222 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 189 - 314
Target Start/End: Complemental strand, 20547 - 20422
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaa 288  Q
    ||||||||| |||||||||||||||||||| |    || |  ||||| |||||| |||||||| || |||||||||| |||||||||||||||||  ||     
T  20547 tgtcataccccaaattttgaccacttttctatggttttacacattttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcag 20448  T
Q  289 agaggttactttgaagtacctcattt 314  Q
    ||||||||||||| ||||||||||||    
T  20447 agaggttactttggagtacctcattt 20422  T

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Target: scaffold0027 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 65701 - 65622
Alignment:
Q  257 aattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt-ttttattccgaatcagaccctt 335  Q
    ||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| || |||||||    
T  65701 aattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctcatttttttattccgagtcggaccctt 65622  T

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Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 501
Target Start/End: Complemental strand, 65510 - 65470
Alignment:
Q  461 tgtcaataagtccgaaggttttcggcagtggtccaaatttc 501  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  65510 tgtcaatgagtccgaaagttttcggcagtggtccaaatttc 65470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 315
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  259 ttttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 192528 - 192623
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttca 284  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||||    
T  192528 tgtcataccccaaattttgaccacttttctctatttttacagattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttca 192623  T

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Target: scaffold0290 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  238 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||| |   | | |||||||||||||||||||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold0991 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 438 - 345
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattt 282  Q
    ||||||||| ||||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | | |||||| |||||||||||    
T  438 tgtcataccccaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaattt 345  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 7620 - 7587
Alignment:
Q  289 agaggttactttgaagtacctcattttttattcc 322  Q
    ||||||||||||||||||||||||||||||||||    
T  7620 agaggttactttgaagtacctcattttttattcc 7587  T

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Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 7695 - 7622
Alignment:
Q  188 atgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattt 261  Q
    |||||||||| |||||||||||||||||||||||| ||| || ||||| ||    ||||||||||| |||||||    
T  7695 atgtcataccccaaattttgaccacttttctctattcttacccatttttttgcattttttaaagtcaggaattt 7622  T

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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 81851 - 81758
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattt 282  Q
    |||||||||  |||||||||||||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| |||||||||||    
T  81851 tgtcataccctaaattttgaccacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaattt 81758  T

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Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 65603 - 65509
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| |||||||||  |||||||||||||  || |  ||||| |||||| |||||||  ||| ||| | |||||||| ||||||||||||    
T  65603 tgtcataccccaaattttgtacacttttctctatttttacacattttgttcgtacttttaaaaccggaaatgtccgtcgttttagacgaaatttc 65509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 61371 - 61418
Alignment:
Q  268 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    ||||| || |||||||| || |||||||||||||||||||||||||||    
T  61371 tttcaaacaaaatttcagcatagaggttactttgaagtacctcatttt 61418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0863 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0863
Description:

Target: scaffold0863; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 437 - 343
Alignment:
Q  189 tgtcatacctcaaattttgaccacttttctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 283  Q
    ||||||||| |||||||||||||||||||| |||  || |  ||||| |||||| |||||||  ||| ||| | | |||||| ||||||||||||    
T  437 tgtcataccccaaattttgaccacttttctttatttttacacattttgttcgtacttttaaaaccggaaatgtccatcgttttagacgaaatttc 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1380
Description:

Target: scaffold1380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 556 - 597
Alignment:
Q  274 acgaaatttcaacaaagaggttactttgaagtacctcatttt 315  Q
    |||||||||| ||| ||||||||||||| |||||||||||||    
T  556 acgaaatttcgacagagaggttactttggagtacctcatttt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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