View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9204_high_3 (Length: 441)
Name: NF9204_high_3
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Original strand, 40846516 - 40846925
Alignment:
| Q |
13 |
gtgttgaggaaggcactgtcttcacattgaactgtatgatggtcttagagctactttgcacatcttgtgctagtttagtctctttcaataaaaattatgc |
112 |
Q |
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| T |
40846516 |
gtgttgaggaaggcactgtcttcacattgaactgtgtgatggtcttagagctactttgcacatcttgtgctagtttagtctctttcaataaaaattatgc |
40846615 |
T |
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| Q |
113 |
ttataaaaataaagtcaatggtttgaagaagttgtaatctagactgtgtaataattatatccaacagcttnnnnnnnncaacgcaactttataatcttgt |
212 |
Q |
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| T |
40846616 |
ttataaaaataaagtcaatggtttgaagaagttgtaatctagactgt--aataattat--ccaacagcttaaaaaaaacaacgcaactttataatcttgt |
40846711 |
T |
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| Q |
213 |
cagctgattcgttttacctgcattgttaggtttgcactttgcagcagtaagttacaatccaatattggttgctcagttctaaggtactatcgaaggaaaa |
312 |
Q |
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| T |
40846712 |
cagctgattcgttttacctgcattgttaggtttgcactttgcagtagtaagttacaagccaatattggttgctcagttctaaggtactatcgaaggaaaa |
40846811 |
T |
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| Q |
313 |
ggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaaacatg |
412 |
Q |
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| T |
40846812 |
ggacttcaagaaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgtattgaacaaaaacatg |
40846911 |
T |
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| Q |
413 |
gtatggagtatatg |
426 |
Q |
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| T |
40846912 |
gtatggagtatatg |
40846925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 45401352 - 45401278
Alignment:
| Q |
323 |
aaactatttacatgtttgacagctataactaattcatttgaaacacaaacaaaagagttaagcttaacaaatgta |
397 |
Q |
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|||||||||| |||||||||| | ||||||||||||| ||||||||| ||| || |||||||||||| ||||||| |
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| T |
45401352 |
aaactatttatatgtttgacaacaataactaattcatatgaaacacacacagaaaagttaagcttaaaaaatgta |
45401278 |
T |
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