View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9204_low_11 (Length: 376)
Name: NF9204_low_11
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 52 - 366
Target Start/End: Original strand, 6907339 - 6907656
Alignment:
| Q |
52 |
acttttgctccttcatcctaaaggtctatttggattgacttattaaaacttatctactggtgtacgcacttttgagaccattcggaaaaggttatggaaa |
151 |
Q |
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| T |
6907339 |
acttttgctccttcatcctaaaggtctatttggattgacttattaaaacttatctactggtgtacgcacttttgagaccattcggaaaaggttatggaaa |
6907438 |
T |
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| Q |
152 |
caacatatgacatgtacataagctgtcaagaaccaattcatcttaaaggtctgattggattgatttattagagcttatttgctggcataagcacttttga |
251 |
Q |
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| T |
6907439 |
caacatatgacatgtacataagctgtcaagaaccaattcatcttaaaggtctgattggattgacttattagagcttatttgctggcataagcacttttga |
6907538 |
T |
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| Q |
252 |
gacgatttggaagataattcaat---nnnnnnnnnnnnnttgagagaagataattcaaataacttactagaccatattggaaaattcgtttcaacgcctc |
348 |
Q |
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| T |
6907539 |
gacaatttggaagataattcaataaaaaaaataaaaaaattgagagaagataattcaaataacttactagaccatattggaaaattcgtttcaacgcctc |
6907638 |
T |
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| Q |
349 |
ctctaaatgatgtccatc |
366 |
Q |
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| T |
6907639 |
ctctaaatgctgttcatc |
6907656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 40591056 - 40591100
Alignment:
| Q |
209 |
gattgatttattagagcttatttgctggcataagcacttttgaga |
253 |
Q |
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| T |
40591056 |
gattgaattatttgagcttatttactggcataagcacttttgaga |
40591100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 25719827 - 25719771
Alignment:
| Q |
198 |
aggtctgattggattgatttattagagcttatttgctggcataagcacttttgagac |
254 |
Q |
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| T |
25719827 |
aggtctgtttggattgatttatttgagtttatttactggcttaagcatttatgagac |
25719771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 529522 - 529455
Alignment:
| Q |
194 |
ttaaaggtctgattggattgatttattagagcttatttgctggcataagcacttttgagacgatttgg |
261 |
Q |
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| T |
529522 |
ttaagggtctgattggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgg |
529455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 14926904 - 14926952
Alignment:
| Q |
206 |
ttggattgatttattagagcttatttgctggcataagcacttttgagac |
254 |
Q |
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| T |
14926904 |
ttggattgacttatttgaacttatttactggcataagcacttgtgagac |
14926952 |
T |
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