View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9204_low_17 (Length: 201)
Name: NF9204_low_17
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 2e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 24991444 - 24991655
Alignment:
| Q |
1 |
tgtgaacagttattacacagcattatcttactgtgaagtgtgttacaagttaccacggccaaggaagaaaagtggaagtgtactcaagtttgttcatctt |
100 |
Q |
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| T |
24991444 |
tgtgaacagttattacacagcattatcttactgtgaagtgtgttacaagttaccacggccaaggaagaaaagtagaagtgtattcaagtttgttcatctt |
24991543 |
T |
|
| Q |
101 |
ccaacatttggtgatagagaatgctggggatttcta------------tttctttattttttgca-cctgtaaataaatgttcatgtcgaaggaattcta |
187 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
24991544 |
ccaacatttggtgatagagaatgctggggatttctatttctatttctttttctttattttttgcaccctgtaaataaatgtttatgtcgaaggaattcta |
24991643 |
T |
|
| Q |
188 |
gtataatctagc |
199 |
Q |
| |
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||| ||| |||| |
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| T |
24991644 |
gtaaaatgtagc |
24991655 |
T |
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