View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9204_low_2 (Length: 703)
Name: NF9204_low_2
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 36901985 - 36901452
Alignment:
| Q |
18 |
gtccctgtgctgtgtacagatcagaggagaaaatagaaaacctatttgcaccatacacattgaatccccaatatgctataggaatcacagcatacacaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901985 |
gtccctgtgctgtgtacagatcagaggagaaaatagaaaacctatttgcaccatacacattgaatccccaatatgctataggaatcacagcatacacaag |
36901886 |
T |
|
| Q |
118 |
caatgcatagccaacaaaaacattgacaatggcaaagaaaggtgagataagaggactgaacaagaatgaagcaacagcagaccaatcaagtgttaaggct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901885 |
caatgcatagccaacaaaaacattgacaatggcaaagaaaggtgagataagaggactgaacaagaatgaagcaacagcagaccaatcaagtgttaaggct |
36901786 |
T |
|
| Q |
218 |
ccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaatacccaacatatccatgatatgcttgtaagcgttgtgaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36901785 |
ccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaatacccaacatacccatgatatgcttgtaagcgttgtgaata |
36901686 |
T |
|
| Q |
318 |
agtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgcccttgaaaattgatggggattatcgtctttctcatgcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901685 |
agtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgcccttgaaaattgatggggattatcgtctttctcatgcaa |
36901586 |
T |
|
| Q |
418 |
agttctgtgtacataaacataaacatgtttggtaagaattgatatgtaaatgtacccttaatagatacacaaaactcagtcaacatcggcacacatacat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901585 |
agttctgtgtacataaacataaacatgtttggtaagaattgatatgtaaatgtacccttaatagatacacaaaactcagtcaacatcggcacacatacat |
36901486 |
T |
|
| Q |
518 |
aattgataagtatgagtttgataaaattaaaaat |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
36901485 |
aattgataagtatgagtttgataaaattaaaaat |
36901452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 628 - 696
Target Start/End: Complemental strand, 36901361 - 36901293
Alignment:
| Q |
628 |
taggactaagtcaccaatgatttaaattgtaacaaaagttagcattcttagctttcaaccaccaccaaa |
696 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901361 |
taggactaagtcatcaatgatttaaatcgtaacaaaagttagcattcttagctttcaaccaccaccaaa |
36901293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 83 - 386
Target Start/End: Original strand, 2172506 - 2172809
Alignment:
| Q |
83 |
ccccaatatgctataggaatcacagcatacacaagcaatgcatagccaacaaaaacattgacaatggcaaagaaaggtgagataagaggactgaacaaga |
182 |
Q |
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||||||||||| || |||| ||||||||| | || |||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2172506 |
ccccaatatgcaatgggaaccacagcatagataatcaatacatagcccacaaaaacattgacaatggcaaagaatggtgagataagaggactgaacaaga |
2172605 |
T |
|
| Q |
183 |
atgaagcaacagcagaccaatcaagtgttaaggctccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaataccca |
282 |
Q |
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|||| || || |||| |||||||||||| | |||||||| ||| | ||| ||||| ||||| |||| || |||||||||||||| |||| ||||||||| |
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| T |
2172606 |
atgatgccactgcagtccaatcaagtgtgatggctccaattccaagacctttcatgcctgagcctaactgctgagctgtgactgacttggtgaataccca |
2172705 |
T |
|
| Q |
283 |
acatatccatgatatgcttgtaagcgttgtgaataagtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgccctt |
382 |
Q |
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||| | ||||||||||||||| || |||||||| ||||||||||||| | |||||||| |||||||||||||||||| || |||||||||||||||||| |
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| T |
2172706 |
acagacccatgatatgcttgtgagtgttgtgaacaagtatcctgggatcacataccatgaaaaactgcatactagtgcaataaagaaaaactttgccctt |
2172805 |
T |
|
| Q |
383 |
gaaa |
386 |
Q |
| |
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|||| |
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|
| T |
2172806 |
gaaa |
2172809 |
T |
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