View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9204_low_3 (Length: 673)
Name: NF9204_low_3
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 136 - 496
Target Start/End: Complemental strand, 719599 - 719239
Alignment:
| Q |
136 |
atcctcttggtcgattatatattgccagggttagttgatttgtatgatagaattatgtaactataaatttagcttaagtctaaagagtttttgtcaagca |
235 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719599 |
atcctcttggtcgattatatattgtcaaggttagttgatttgtatgatagaattatgtaactataaatttagcttaagtctaaagagtttttgtcaagca |
719500 |
T |
|
| Q |
236 |
ctctctaaatgaaataatcaatttaggagtttcatgtcgnnnnnnngaattaagaacataaataattcactgatataacgaaacaaagaatatatataat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719499 |
ctctctaaatgaaataatcaatttaggagtttcatgtcgaaaaaaagaattaagaacataaataattcactgatataacgaaacaaagaatatatataat |
719400 |
T |
|
| Q |
336 |
cagctagaatcatacttaagtacacataaacccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactattt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719399 |
cagctagaatcatacttaagtacacataatcccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactattt |
719300 |
T |
|
| Q |
436 |
gataattaaataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719299 |
gataattaaataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
719239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 529 - 658
Target Start/End: Complemental strand, 719206 - 719084
Alignment:
| Q |
529 |
gatactttcaaatagttctcaattaatctgcaaataaattatatcatattcaacttcaatagaggtcaaacatagaccttgtagataatagaagcataca |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
719206 |
gatactttcaaatagttctcaattaatctgcaaataaattatatcatattcaacttcaatagaggtcaaacatagac-------ataatagaagcataca |
719114 |
T |
|
| Q |
629 |
cacaattgactatatcatcagtatatattt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
719113 |
cacaattgactatatcatcagtatatattt |
719084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 719680 - 719601
Alignment:
| Q |
14 |
cagagaggaaggagagcgtttgtgttcagatattcataaactaagacacgctaaatgtagtgaaactttacaaactaaag |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719680 |
cagagaggaaggagagcgtttgtgttcagatattcataaactaagacacgctaaatgtagtgaaactttacaaactaaag |
719601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 573
Target Start/End: Complemental strand, 704070 - 704026
Alignment:
| Q |
529 |
gatactttcaaatagttctcaattaatctgcaaataaattatatc |
573 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
704070 |
gatatttttaaatatttctcaattaatctgcaaataaattttatc |
704026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University