View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9204_low_4 (Length: 474)
Name: NF9204_low_4
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 37890828 - 37890373
Alignment:
| Q |
1 |
agataagacatttcattgtcattgaaaatgacctaaaaccaacatttcaacaaggcaaaaatctccaaaggcatgcatgacagaatcgataatagtctta |
100 |
Q |
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| T |
37890828 |
agataagacatttcattgtcattgaaaatgacctaaaaccaacatttcaacaaggcaaaaatctccaaaggcatgcatgacagaatcgataatagtctta |
37890729 |
T |
|
| Q |
101 |
acctttgtcagagtggtaccctatgtggttttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaacaag |
200 |
Q |
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| T |
37890728 |
acctttgtgagagtggtaccctatgtggttttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaacaag |
37890629 |
T |
|
| Q |
201 |
attatctgccactaaccgttttcccttagctctcaaccttttgcaacccctgaagagtaaccaatacaaacaatttttaagnnnnnnnnntcctaggaga |
300 |
Q |
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| T |
37890628 |
attatctgccactaaccgttttcccttagctctcaaccttttacaacccctgaagagtaaccaatacaaacaatttttaagaaaaaaaaatcctaggaga |
37890529 |
T |
|
| Q |
301 |
tccctggtgcattgtttcaatatcaaattaaaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaannnnnnnnnnnngac |
400 |
Q |
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| T |
37890528 |
tccctggtgcaatgtttcaatatcaaattaaaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaattttttatttttgac |
37890429 |
T |
|
| Q |
401 |
agcagtaatttttatttaaacattccattacaacattgagtcggtaaccttttgtc |
456 |
Q |
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| T |
37890428 |
agcagtaatttttatttaaacattccattacaacattgagtcggtaaccttttgtc |
37890373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 33 - 385
Target Start/End: Complemental strand, 37185916 - 37185568
Alignment:
| Q |
33 |
ctaaaaccaacatttcaacaaggcaaaaatctccaaa--ggcatgcatgacagaatcgataatagtcttaacctttgtcagagtggtaccctatgtggtt |
130 |
Q |
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|||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||| ||||||| ||||||||||||| ||||||||| || |||||||| |
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| T |
37185916 |
ctaaaaccaacatttcaacaagacaaaaatgtccaaacaggcatccatgacagaattgataataatcttaacctttgtgagagtggtagccaatgtggtt |
37185817 |
T |
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| Q |
131 |
ttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaacaagattatctgccactaaccgttttcccttagc |
230 |
Q |
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||| ||||||||||||||||||| | |||||||||||||||||| |||||||||||| | |||||||||||| ||||| | |||||| ||| |||| | |
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| T |
37185816 |
ttggaaccctcatcagagacgaaaaaaggctattgtaagagaatgatctccatccca-tagaagaacaagatgatctgacgctaaccaatttttcttaac |
37185718 |
T |
|
| Q |
231 |
tctcaaccttttgcaacccctgaagagtaaccaatacaaacaatttttaagnnnnnnnnntcctaggagatccctggtgcattgtttcaatatcaaatta |
330 |
Q |
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| T |
37185717 |
cgtcaatcttaagctacccctgaagagtaatcaatacaaacaaattaaaa-----ataaatcccaggaaatccatggtacaatgtttcattatcaaatta |
37185623 |
T |
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| Q |
331 |
aaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaa |
385 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
37185622 |
aaatagtaagtgccatcaatctgaggtatgtttggatcaaaggaggaatatgaaa |
37185568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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