View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9204_low_9 (Length: 393)
Name: NF9204_low_9
Description: NF9204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9204_low_9 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 2440330 - 2440722
Alignment:
| Q |
1 |
aaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatgatttgatgaaattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440330 |
aaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcttgctaaagaagatgggaactataagaatgatttgatgaaattca |
2440429 |
T |
|
| Q |
101 |
ctatttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggcttgagaactatgagcagcgttcatttgaagcaagaaatg |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2440430 |
ctagttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggcttgagaactatgagcagtgttcatttgaagcaagaaatg |
2440529 |
T |
|
| Q |
201 |
gcaagggatctaacattgatcatcaggagattcttagtactctgtgcgcctgaggccgattgggttaggatttaggaacaaagacggaacaccaagaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440530 |
gcaagggatctaacattgatcatcaggagattcttagtactctgtgcgcctgaggccgattgggttaggatttaggaacaaagacggaacaccaagaaaa |
2440629 |
T |
|
| Q |
301 |
cttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgacc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2440630 |
cttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgacc |
2440722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 41656760 - 41656390
Alignment:
| Q |
17 |
cattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatgatttgatgaaattcactatttttgttagagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
41656760 |
cattagctaaagagttctttgcaaatgcatatctgggtcctgctaaagaagatgggaactataagaatgatttgatgaaattcactagttttgtcagagg |
41656661 |
T |
|
| Q |
117 |
gaagaaggtgccatttca--gggaaattatcaatcaattgtttaggcttgagaactatgagcagcgttcatttgaagcaagaaatggcaagggatctaac |
214 |
Q |
| |
|
|||| |||||||||||| | |||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
41656660 |
caagatggtgccatttcatgagaaaattatcaatcgattgtttgggctagagaactatgagcagtgttcatttgaagcaagaaaggcaaagggatctaac |
41656561 |
T |
|
| Q |
215 |
attgatcatcaggagattcttagtactctgtgc--gcctgaggccgattgggttaggatttaggaacaaagacggaacaccaagaaaacttcactctact |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||| |||||||||| ||||||| ||||| || |
|
|
| T |
41656560 |
attgatcatcaggagattcttagtactctgtgcaggcccgaggccgattgg-------attaggaagaaagatggaacaccaataaaacttaactcttct |
41656468 |
T |
|
| Q |
313 |
gacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
41656467 |
gacctgacacccattgctaaagcatgggaaacatttattttgcataccttgcttccgagttcaaatgtgtcagacttg |
41656390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 41665537 - 41665148
Alignment:
| Q |
1 |
aaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatgatttgatgaaattca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
41665537 |
aaagaggctagtgcgacattagctaaagagttctttgcaaatgcatatatgggtactgccaaagaagatgggaactatgagaatgatctgatgaaattca |
41665438 |
T |
|
| Q |
101 |
ctatttttgttagagggaagaaggtgccatttca--gggaaattatcaatcaattgtttaggcttgagaactatgagcagcgttcatttgaagcaagaaa |
198 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
41665437 |
ctagttttgtgagagggaagaaggtgccatttcatgagaaaattatcaatcaattgtttgggcttgagaactatgagcagtgttcgtttgaagcaagaaa |
41665338 |
T |
|
| Q |
199 |
tggcaagggatctaacattgatcatcaggagattcttagtactctgtgc--gcctgaggccgattgggttaggatttaggaacaaagacggaacaccaag |
296 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||||||||| ||| ||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
41665337 |
gaccaagggctctaacattgatcatcaggagattcgtagcactctgtgcaggcccgaggctgattgggttagga-----ga--aaagatggaacaccatc |
41665245 |
T |
|
| Q |
297 |
aaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgacc |
393 |
Q |
| |
|
|| ||| ||| || ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41665244 |
aagactccacacttctgacctcacacccattgctaaagcatgggcaacatttattttgcgaaccttgctcccgtgttcaaatgtgtcagacttgacc |
41665148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 2 - 393
Target Start/End: Complemental strand, 41648684 - 41648296
Alignment:
| Q |
2 |
aagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatgatttgatgaaattcac |
101 |
Q |
| |
|
|||||||| |||| ||||| |||||||| || | ||||||||||||| |||||| ||||||||||||||||| ||||||||||| | ||| ||||||| |
|
|
| T |
41648684 |
aagaggcttgtacaacatttgctaaagaattgtctgcaaatgcatatcagggtcctactaaagaagatgggaacaataagaatgatctaatgcaattcac |
41648585 |
T |
|
| Q |
102 |
tatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttaggcttgagaactatgagcagcgttcatttgaagcaagaaat |
199 |
Q |
| |
|
|| |||||| |||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||| ||||| || |||| |||||| ||||||| |
|
|
| T |
41648584 |
tagttttgtgagagggaagaaggttccatttcatgataaaattatcaatcaattgtttgggcttgagaacaatgaggagtgttcctttgaaacaagaaag |
41648485 |
T |
|
| Q |
200 |
ggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttaggatttaggaacaaagacggaacaccaaga |
297 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||| || | ||||||| | |
|
|
| T |
41648484 |
accaagggctctaacattgatcatcaggagattcacagtactctgtgtaggcccgaggccgattggg-------ttaggaacaatgatgaaacaccatta |
41648392 |
T |
|
| Q |
298 |
aaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgacc |
393 |
Q |
| |
|
| ||| ||| || || || ||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||| |||||| |||||| |
|
|
| T |
41648391 |
agactccacacttctagtctcacacccattgcgaaagcatggacaacatttgttttgcatacattactcccatgttcaaatgcgtcagagttgacc |
41648296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 91 - 393
Target Start/End: Complemental strand, 41706678 - 41706379
Alignment:
| Q |
91 |
atgaaattcactatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttaggcttgagaactatgagcagcgttcatttg |
188 |
Q |
| |
|
||||||||||||| |||| | ||||||||||| || |||||||| | | ||||||||| |||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
41706678 |
atgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttg |
41706579 |
T |
|
| Q |
189 |
aagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttaggatttaggaacaaagacg |
286 |
Q |
| |
|
|||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||| |
|
|
| T |
41706578 |
aagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattggg-------ttaggaacaaagacg |
41706486 |
T |
|
| Q |
287 |
gaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcaga |
386 |
Q |
| |
|
||||||| | |||||||| | || ||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
41706485 |
gaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtgttcaaatgtgtcaga |
41706386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 78 - 393
Target Start/End: Complemental strand, 41716494 - 41716182
Alignment:
| Q |
78 |
taagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttaggcttgagaactatgag |
175 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41716494 |
taagaatgatcgaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgag |
41716395 |
T |
|
| Q |
176 |
cagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttaggattt |
273 |
Q |
| |
|
|| ||||||||||||||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||| ||| ||||| ||||||| || |
|
|
| T |
41716394 |
aagtgttcatttgaagcaagaaaggccaagggttctaacgttgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattggg-------tt |
41716302 |
T |
|
| Q |
274 |
aggaacaaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgtt |
373 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | | |||||| || ||| ||||||||| |||||||| |||||||||| |||||||||||||||| |
|
|
| T |
41716301 |
aggaacaaagatggaacaccagcaaaacttcgcacgtgtgacctcactcccgttgctaaagtatgggcaatgtttgttttgcgcaccttgctcccatgtt |
41716202 |
T |
|
| Q |
374 |
caaatgtgtcagacttgacc |
393 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
41716201 |
caaatagatcagacttgacc |
41716182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41706750 - 41706703
Alignment:
| Q |
1 |
aaagaggctagtacgacattagctaaagagttctttgcaaatgcatat |
48 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41706750 |
aaagatgctagtacgacattagctaaagagttctttgcaaatgcatat |
41706703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 41716553 - 41716506
Alignment:
| Q |
1 |
aaagaggctagtacgacattagctaaagagttctttgcaaatgcatat |
48 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41716553 |
aaagatgctagtacgacaatagctaaagagttctttgcaaatgcatat |
41716506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University