View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9205_high_3 (Length: 240)
Name: NF9205_high_3
Description: NF9205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9205_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 36344175 - 36344037
Alignment:
| Q |
9 |
ttggtgttgccacatttccaatgacataaagagattaaactgaggagctgtattaatattgtatggtaacacgaataaatgcggtttgtttgtatataat |
108 |
Q |
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| T |
36344175 |
ttggtgttgctacatttccaatgacataaagagattaaactgaggagctgtattaatattgtatggtaacacgaataaatgcggtctgcttgtctattat |
36344076 |
T |
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| Q |
109 |
tttgtgactcctatggctaccgttcctgaacttacttgta |
148 |
Q |
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| T |
36344075 |
tttgtgactccta-ggctaccgttcctgaacttacttgta |
36344037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 38107083 - 38107127
Alignment:
| Q |
9 |
ttggtgttgccacatttccaatgacataaagagattaaactgagg |
53 |
Q |
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| T |
38107083 |
ttggtgttgctacatttccaatgacataaagagattaaactgagg |
38107127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 36344008 - 36343973
Alignment:
| Q |
142 |
acttgtaattgagaagttccatttgaaactttccaa |
177 |
Q |
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| T |
36344008 |
acttctaattgagaagttccatttgaaactttccaa |
36343973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 14726957 - 14726922
Alignment:
| Q |
20 |
acatttccaatgacataaagagattaaactgaggag |
55 |
Q |
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| T |
14726957 |
acatttccaatgacatgaagagattaaactgaggag |
14726922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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