View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9205_low_1 (Length: 571)
Name: NF9205_low_1
Description: NF9205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9205_low_1 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Complemental strand, 7612633 - 7612078
Alignment:
| Q |
13 |
atggacatcaatcactctaatttgacttaagcaaactcaccaatgacatcaacagtagtttttccattggagaaccttccagttggaccaccattaaagt |
112 |
Q |
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| T |
7612633 |
atggacatcaatcactctaatttgacttaagcaaactcaccaatgacatcaacagtagtttttccattggagaaccttccagttggaccaccattaaagt |
7612534 |
T |
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| Q |
113 |
caatcccataaggaagataattagctttggccaaagaattaagattgttattgttcccatcatctactaaagagtcaccaaaaatgaagtagcaaggtac |
212 |
Q |
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| T |
7612533 |
caatcccataaggaagataattagctttggccaaagaattaagattgttattgtttccatcatctaccaaagagtcaccaaaaatgaagtagcaaggtac |
7612434 |
T |
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| Q |
213 |
ttgaggatcagcttcaaccttactactccacaaacccaaaaccaccaccatcattacacataaattcataatccacttcacaatattgacttccctagat |
312 |
Q |
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| T |
7612433 |
ttgaggatcagcttcaaccttactactccacaaacccaaaaccaccaccatcattacacataaattcataatccacttcacaatattgacttccctagat |
7612334 |
T |
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| Q |
313 |
gccatattaattgaagcaagaaatgtaacaacaaaatataatgtaagtattatagaatgtggaata--------gtatgtgaatgagt-ggatatgggaa |
403 |
Q |
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| T |
7612333 |
gccatattaattgaagcaagaaatgtaacaacaaaatataatgtaagtattatagaatgtggtatagtatgtgtgtatgtgaatgagtgggatatgggaa |
7612234 |
T |
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| Q |
404 |
actcctgaaatgtgacaattatatagatgcagaaaggaagagattatggcaagctttttagcttttacagttggggacacatatttttgttaggaacatt |
503 |
Q |
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| T |
7612233 |
actcctgaaatgtgacaattatatagatgcagaaaggaagagattatggcaagctttttagcttttacagttggggacacatatttttgttaggaacatt |
7612134 |
T |
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| Q |
504 |
aaattcactccaacatggtgtggaattgagtgggcattaatgtcggtgcttcttga |
559 |
Q |
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| T |
7612133 |
aaattcactccaacatggtgtggaattgagtgggcattaatgtcggtgcttcttga |
7612078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 36363769 - 36363937
Alignment:
| Q |
59 |
catcaacagtagtttttccattggagaaccttccagttggaccaccattaaagtcaatcccataaggaagataattagctttggccaaagaattaagatt |
158 |
Q |
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| T |
36363769 |
catcaacagtggtttttccgttggaaaaccttccagtaggtccacca---aagtcaattccataaggaaggtaatcagctctagccaaagattgaagacc |
36363865 |
T |
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| Q |
159 |
gttattgttcccatcatctactaaagagtcaccaaaaatgaagtagcaaggtacttgaggatcagcttcaac |
230 |
Q |
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| T |
36363866 |
attgttgttaccattatccaccaaagaatcaccaaatatgaagtaacaaggaacttgtggatcagctccaac |
36363937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 5057 - 5221
Alignment:
| Q |
51 |
accaatgacatcaacagtagtttttccattggagaaccttccagttggaccaccattaaagtcaatcccataaggaagataattagctttggccaaagaa |
150 |
Q |
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| T |
5057 |
accaatgacatcaacagtggttttgccgtttgaaaatcttccagttggtccaccaggaaagtcaattccataaggtaggtaattagcttttgcaatagaa |
5156 |
T |
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| Q |
151 |
ttaagattgttattgttcccatcatctactaaagagtcaccaaaaatgaagtagcaaggtacttg |
215 |
Q |
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| || | ||| ||||| |||| ||| || |||||||| |||||||| || |||||||| ||||| |
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| T |
5157 |
gtgagttggttgttgttaccattatccaccaaagagtctccaaaaataaaatagcaaggaacttg |
5221 |
T |
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