View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9205_low_3 (Length: 358)

Name: NF9205_low_3
Description: NF9205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9205_low_3
NF9205_low_3
[»] scaffold1391 (2 HSPs)
scaffold1391 (1-214)||(1026-1236)
scaffold1391 (282-320)||(1304-1342)
[»] chr2 (1 HSPs)
chr2 (102-168)||(18456337-18456403)
[»] chr3 (1 HSPs)
chr3 (104-168)||(52612302-52612366)
[»] chr8 (1 HSPs)
chr8 (282-318)||(34903178-34903214)


Alignment Details
Target: scaffold1391 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold1391
Description:

Target: scaffold1391; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 1026 - 1236
Alignment:
Q  1 ttgagagagtacaataaaaagtgcgctactcatatgatctaatagttgaaaaactaacttgatcatgatacagaagtttattattattannnnnnnnnaa 100  Q
    ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||  ||||||||||  | ||          ||    
T  1026 ttgagagagtacaataaaaagtgcgctactcatcttatctaataattgaaaaactaacttgatcatgatagggaagtttattcctttt---ttttttaaa 1122  T
Q  101 acgacaaatattattaacccgaccttttgcgagatgcaagaaggtggagaaagaaaaggactacaagaaactttttatatgtgagataatgcatttcaaa 200  Q
    ||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  1123 acggcaaatattattaacccgaccttttgcaagatgcaagaaggcggagaaagaaaaggactacaagaaactttttatatatgagataatgtatttcaaa 1222  T
Q  201 gaactggaattaat 214  Q
    ||||||||||||||    
T  1223 gaactggaattaat 1236  T

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Target: scaffold1391; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 1304 - 1342
Alignment:
Q  282 tgaataatattgtagtaactaagtgggcagttttcttaa 320  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  1304 tgaataatattgtagtaactaagtaggcagtttttttaa 1342  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 18456337 - 18456403
Alignment:
Q  102 cgacaaatattattaacccgaccttttgcgagatgcaagaaggtggagaaagaaaaggactacaaga 168  Q
    ||||||||||||||||||||||||||||| ||||||||  ||| |||||||| ||| ||||||||||    
T  18456337 cgacaaatattattaacccgaccttttgcaagatgcaaataggcggagaaaggaaacgactacaaga 18456403  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 52612302 - 52612366
Alignment:
Q  104 acaaatattattaacccgaccttttgcgagatgcaagaaggtggagaaagaaaaggactacaaga 168  Q
    |||||||||||||||||||||||| || ||| ||||  ||| |||||||| |||||| |||||||    
T  52612302 acaaatattattaacccgacctttcgcaagacgcaaataggcggagaaaggaaaggattacaaga 52612366  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 34903178 - 34903214
Alignment:
Q  282 tgaataatattgtagtaactaagtgggcagttttctt 318  Q
    |||||||||  ||||||||||||||||||||||||||    
T  34903178 tgaataataaagtagtaactaagtgggcagttttctt 34903214  T

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