View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9205_low_4 (Length: 353)
Name: NF9205_low_4
Description: NF9205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9205_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 33340017 - 33340333
Alignment:
| Q |
23 |
agattaagatcatgcatgggatgtgagtttannnnnnnaacgaagggacgtgagtatgttgtaaccaaatttcatgtttaataaaattgtgacccctttc |
122 |
Q |
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| T |
33340017 |
agattaagatcatgcatgggatgtgggtttatttttttaacgaagggacgtgagtatgttgtaaccaaatttcatgtttaataaaattgtgatccctttc |
33340116 |
T |
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| Q |
123 |
ctaacaaataaactttacggtccctcttactgagatatctatgtggttgattccacctttttcaaacaagtagtaggatccttatgatacttatgcaaca |
222 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33340117 |
ctaacaaataaaccttacggtccctcttactgagatatctatgtggttgattccaccttgttcaaacaagtagtaggatccttatgatacttatgcaaca |
33340216 |
T |
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| Q |
223 |
acaaacctaatatctactacacggtaggaatgataaccaactttatgaatgactccatccatgaagccacatctatctgtggtaaaacgaataccgagat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
33340217 |
acaaacctaatatctactacacggtaggaatgataaccaactttatgaatgactccatccatgaagccacatctatttgttgtaaaacgaataccgagat |
33340316 |
T |
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| Q |
323 |
atgtgaaaggaacaaac |
339 |
Q |
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||||||||||||||||| |
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| T |
33340317 |
atgtgaaaggaacaaac |
33340333 |
T |
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