View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_high_3 (Length: 382)

Name: NF9206_high_3
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9206_high_3
NF9206_high_3
[»] chr4 (2 HSPs)
chr4 (1-371)||(27724909-27725278)
chr4 (76-116)||(4071832-4071872)
[»] chr6 (3 HSPs)
chr6 (84-116)||(32980491-32980523)
chr6 (84-117)||(2514651-2514684)
chr6 (76-113)||(27595647-27595684)
[»] chr1 (2 HSPs)
chr1 (76-115)||(45234148-45234187)
chr1 (76-117)||(50319241-50319282)
[»] chr7 (1 HSPs)
chr7 (75-117)||(49060489-49060531)
[»] chr8 (2 HSPs)
chr8 (84-117)||(1470944-1470977)
chr8 (76-117)||(4558747-4558788)
[»] chr3 (1 HSPs)
chr3 (76-117)||(1395620-1395661)
[»] chr2 (1 HSPs)
chr2 (76-117)||(25609745-25609786)
[»] chr5 (1 HSPs)
chr5 (84-116)||(35960364-35960396)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 27725278 - 27724909
Alignment:
Q  1 gtccataaactattttcaaatgatttccataagcacttcaagatagattgtnnnnnnnncttatcgcttttaccaaaaataacttgactttattttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||| |||||||| ||||||||||||||| |||||||||    
T  27725278 gtccataaactattttcaaatgatttccataagcacttcaagatagattgtaaaaaaaacttatcacttttaccgaaaataacttgactt-attttatgt 27725180  T
Q  101 tttattatagaaatagcaaacacttatagtactataagtgcttaatcaagccgttaatccaaacatgatcaaagttagtttgctagcaaagaaacgagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27725179 tttattatagaaatagcaaacacttatagtactataagtgcttaatcaagccgttaatccaaacatgaccaaagttagtttgctagcaaagaaacgagag 27725080  T
Q  201 cgctacctgctcaacaatcttcttggaggaaggtgcattacattttcccatagtaaagcttccacagaaacccgaaggatcaccaaagcttgcaaattca 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  27725079 ctctacctgctcaacaatcttcttggaggaaggtgcattacattttcccataataaagcttccacagaaacccgaaggatcaccaaagcttgcaaactca 27724980  T
Q  301 acagccgtaannnnnnnctggtctggacatgtgataaaagcttctggagtcagattctctcccacaggttc 371  Q
    ||||||||||       |||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  27724979 acagccgtaatttttttctggtccggacacgtgataaaagcttctggagtcagattctcccccacacgttc 27724909  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 4071872 - 4071832
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaatag 116  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  4071872 aaaataatttgactttattttatcttttgttatagaaatag 4071832  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 32980523 - 32980491
Alignment:
Q  84 ttgactttattttatgttttattatagaaatag 116  Q
    |||||||||||||||||||||||||||||||||    
T  32980523 ttgactttattttatgttttattatagaaatag 32980491  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 2514684 - 2514651
Alignment:
Q  84 ttgactttattttatgttttattatagaaatagc 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  2514684 ttgactttattttatcttttattatagaaatagc 2514651  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 27595647 - 27595684
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaa 113  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  27595647 aaaataatttgactttattttatcttttattatagaaa 27595684  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 45234187 - 45234148
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaata 115  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  45234187 aaaataatttgactttattttatcttttattatagaaata 45234148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 50319282 - 50319241
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaatagc 117  Q
    |||| |||||||||||||||||| |||| |||||||||||||    
T  50319282 aaaacaacttgactttattttatcttttgttatagaaatagc 50319241  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 49060531 - 49060489
Alignment:
Q  75 aaaaataacttgactttattttatgttttattatagaaatagc 117  Q
    |||||||| ||||||||||||||| |||| |||||||||||||    
T  49060531 aaaaataatttgactttattttattttttgttatagaaatagc 49060489  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 1470944 - 1470977
Alignment:
Q  84 ttgactttattttatgttttattatagaaatagc 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  1470944 ttgactttattttatcttttattatagaaatagc 1470977  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 4558788 - 4558747
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaatagc 117  Q
    ||||||| || |||||||||||| ||||||||||||||||||    
T  4558788 aaaataatttaactttattttatcttttattatagaaatagc 4558747  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 1395661 - 1395620
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaatagc 117  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  1395661 aaaataatttgactttattttatcttttgttatagaaatagc 1395620  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 25609786 - 25609745
Alignment:
Q  76 aaaataacttgactttattttatgttttattatagaaatagc 117  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  25609786 aaaataaattgactttattttatcttttcttatagaaatagc 25609745  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 35960396 - 35960364
Alignment:
Q  84 ttgactttattttatgttttattatagaaatag 116  Q
    ||||||||||||||| |||||||||||||||||    
T  35960396 ttgactttattttatcttttattatagaaatag 35960364  T

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