View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_high_7 (Length: 281)

Name: NF9206_high_7
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9206_high_7
NF9206_high_7
[»] chr6 (2 HSPs)
chr6 (1-241)||(23117067-23117310)
chr6 (71-241)||(23112339-23112512)
[»] chr2 (2 HSPs)
chr2 (1-241)||(25064288-25064531)
chr2 (71-241)||(25059559-25059732)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23117067 - 23117310
Alignment:
Q  1 atgatgttattaataatcagtttccactctttcaccttgtcctcaaggtgacacttttnnnnnnnagtattgttagtagacttcctattaaaaaggtgta 100  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||| ||||||       |||||||||||||||| ||||||||||||||||||    
T  23117067 atgatgttattaataatcagtttccactctttcaccttgaggacaaggtgaaacttttgggggggagtattgttagtagacctcctattaaaaaggtgta 23117166  T
Q  101 tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcat---ttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  23117167 tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcatcggttg 23117266  T
Q  198 ttttatggtttgggtttggtttgggagattctaggctctctaag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23117267 ttttatggtttgggtttggtttgggagattctaggctctctaag 23117310  T

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Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 23112339 - 23112512
Alignment:
Q  71 tgttagtagacttcctattaaaaaggtgtatgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaa 170  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23112339 tgttagtagacctcctattaaaaaggtgtatgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaa 23112438  T
Q  171 taagagtgacatttttagtgtcat---ttgttttatggtttgggtttggtttgggagattctaggctctctaag 241  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  23112439 taagagtgacatttttagtgtcatcggttgttttatggtttgggtttggtttgggagattctaggctctctaag 23112512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25064288 - 25064531
Alignment:
Q  1 atgatgttattaataatcagtttccactctttcaccttgtcctcaaggtgacacttttnnnnnnnagtattgttagtagacttcctattaaaaaggtgta 100  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||| ||||||       |||||||||||||||| ||||||||||||||||||    
T  25064288 atgatgttattaataatcagtttccactctttcaccttgaggacaaggtgaaacttttgggggggagtattgttagtagacctcctattaaaaaggtgta 25064387  T
Q  101 tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcat---ttg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  25064388 tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcatcggttg 25064487  T
Q  198 ttttatggtttgggtttggtttgggagattctaggctctctaag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25064488 ttttatggtttgggtttggtttgggagattctaggctctctaag 25064531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 25059559 - 25059732
Alignment:
Q  71 tgttagtagacttcctattaaaaaggtgtatgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaa 170  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25059559 tgttagtagacctcctattaaaaaggtgtatgtgaggaataagtttaaaagccctatcaattaggcccaattgaggtggctagttttgctttaaatagaa 25059658  T
Q  171 taagagtgacatttttagtgtcat---ttgttttatggtttgggtttggtttgggagattctaggctctctaag 241  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  25059659 taagagtgacatttttagtgtcatcggttgttttatggtttgggtttggtttgggagattctaggctctctaag 25059732  T

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