View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_low_11 (Length: 358)

Name: NF9206_low_11
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9206_low_11
NF9206_low_11
[»] chr5 (30 HSPs)
chr5 (20-352)||(3114015-3114351)
chr5 (118-246)||(37873588-37873716)
chr5 (20-246)||(35310477-35310704)
chr5 (24-246)||(27336722-27336945)
chr5 (145-237)||(25663009-25663101)
chr5 (35-246)||(32269663-32269875)
chr5 (96-243)||(15291954-15292101)
chr5 (117-246)||(13166859-13166988)
chr5 (96-237)||(33691983-33692124)
chr5 (96-236)||(43115386-43115525)
chr5 (24-246)||(43129563-43129785)
chr5 (147-237)||(38875676-38875766)
chr5 (96-237)||(14423716-14423857)
chr5 (40-246)||(35455985-35456192)
chr5 (24-196)||(433371-433544)
chr5 (149-229)||(26212564-26212644)
chr5 (172-237)||(34335375-34335440)
chr5 (150-243)||(32230489-32230582)
chr5 (170-246)||(42921726-42921802)
chr5 (189-239)||(430638-430688)
chr5 (254-312)||(37873747-37873805)
chr5 (161-222)||(8858969-8859030)
chr5 (147-237)||(8100590-8100680)
chr5 (167-239)||(14436536-14436605)
chr5 (193-243)||(14723269-14723319)
chr5 (256-320)||(23023527-23023591)
chr5 (253-320)||(32269905-32269972)
chr5 (145-239)||(9829331-9829423)
chr5 (175-240)||(26577407-26577472)
chr5 (245-312)||(15292124-15292192)
[»] chr4 (34 HSPs)
chr4 (24-246)||(31847116-31847339)
chr4 (20-239)||(53619622-53619842)
chr4 (24-240)||(50000780-50000998)
chr4 (123-237)||(55933417-55933531)
chr4 (110-246)||(56462049-56462184)
chr4 (24-246)||(132414-132639)
chr4 (151-232)||(23255747-23255828)
chr4 (124-237)||(48656866-48656979)
chr4 (23-246)||(25504324-25504546)
chr4 (126-246)||(30940697-30940816)
chr4 (122-237)||(12918326-12918441)
chr4 (108-246)||(26521517-26521655)
chr4 (130-247)||(50462908-50463025)
chr4 (127-246)||(600651-600770)
chr4 (148-246)||(34107674-34107774)
chr4 (79-209)||(53170573-53170703)
chr4 (252-320)||(45661623-45661691)
chr4 (126-237)||(12053451-12053562)
chr4 (110-237)||(16957580-16957707)
chr4 (20-147)||(3330078-3330206)
chr4 (170-246)||(43849350-43849426)
chr4 (192-239)||(24719970-24720017)
chr4 (183-246)||(50483211-50483274)
chr4 (82-192)||(38535500-38535610)
chr4 (148-246)||(46440869-46440967)
chr4 (161-237)||(28739943-28740020)
chr4 (194-246)||(3330025-3330077)
chr4 (254-310)||(30940841-30940897)
chr4 (191-246)||(7536594-7536649)
chr4 (254-320)||(4419195-4419261)
chr4 (176-222)||(46391323-46391369)
chr4 (161-223)||(52022166-52022228)
chr4 (176-237)||(6865828-6865889)
chr4 (167-240)||(45386060-45386133)
[»] chr8 (24 HSPs)
chr8 (20-246)||(35739838-35740064)
chr8 (98-237)||(38815332-38815471)
chr8 (96-239)||(39434703-39434846)
chr8 (96-246)||(500256-500406)
chr8 (25-246)||(25021670-25021892)
chr8 (96-246)||(3187998-3188148)
chr8 (79-246)||(24125057-24125224)
chr8 (126-246)||(6592604-6592724)
chr8 (37-240)||(8619849-8620047)
chr8 (111-246)||(10189572-10189707)
chr8 (125-239)||(4073571-4073685)
chr8 (161-231)||(8882371-8882441)
chr8 (143-239)||(28196228-28196324)
chr8 (126-206)||(37517163-37517243)
chr8 (250-313)||(25021919-25021982)
chr8 (144-315)||(42922103-42922273)
chr8 (150-246)||(6618313-6618409)
chr8 (123-199)||(11611199-11611275)
chr8 (158-236)||(10556283-10556361)
chr8 (254-320)||(38815226-38815292)
chr8 (141-225)||(4699919-4700002)
chr8 (208-247)||(43824017-43824056)
chr8 (167-229)||(39671170-39671232)
chr8 (124-181)||(8390234-8390291)
[»] chr6 (27 HSPs)
chr6 (96-246)||(33220639-33220789)
chr6 (125-246)||(17249262-17249383)
chr6 (96-246)||(959609-959759)
chr6 (24-239)||(357572-357788)
chr6 (96-244)||(45605-45753)
chr6 (39-246)||(4206466-4206674)
chr6 (96-246)||(34304525-34304675)
chr6 (20-320)||(32115650-32115945)
chr6 (96-240)||(28008915-28009062)
chr6 (96-246)||(34415465-34415615)
chr6 (35-222)||(12401384-12401572)
chr6 (122-230)||(34168913-34169021)
chr6 (140-246)||(24016366-24016472)
chr6 (108-234)||(34554217-34554343)
chr6 (166-246)||(4165920-4166000)
chr6 (24-236)||(29337938-29338147)
chr6 (23-237)||(28543413-28543628)
chr6 (24-178)||(20693456-20693610)
chr6 (150-239)||(3714953-3715042)
chr6 (255-313)||(29338189-29338247)
chr6 (144-237)||(28625968-28626062)
chr6 (252-320)||(28625863-28625930)
chr6 (156-239)||(6225108-6225191)
chr6 (254-313)||(28009096-28009155)
chr6 (171-240)||(7200540-7200607)
chr6 (260-320)||(3137362-3137422)
chr6 (99-223)||(13398113-13398237)
[»] chr1 (27 HSPs)
chr1 (96-246)||(34644595-34644745)
chr1 (79-246)||(19035476-19035643)
chr1 (20-246)||(28040978-28041205)
chr1 (20-246)||(29169645-29169871)
chr1 (40-229)||(50161288-50161478)
chr1 (86-246)||(25375751-25375911)
chr1 (20-246)||(45659498-45659726)
chr1 (95-245)||(42919890-42920039)
chr1 (126-237)||(31737281-31737392)
chr1 (96-237)||(2764517-2764658)
chr1 (40-247)||(37200011-37200217)
chr1 (171-236)||(21473042-21473107)
chr1 (145-244)||(20259774-20259873)
chr1 (37-246)||(4861857-4862067)
chr1 (148-246)||(22346924-22347022)
chr1 (122-239)||(16500070-16500187)
chr1 (147-246)||(2898731-2898833)
chr1 (150-243)||(36486918-36487011)
chr1 (254-315)||(38731546-38731607)
chr1 (147-223)||(23043929-23044005)
chr1 (96-215)||(37932146-37932264)
chr1 (197-246)||(24177540-24177589)
chr1 (157-238)||(50314613-50314694)
chr1 (151-218)||(35387643-35387710)
chr1 (185-246)||(7213279-7213341)
chr1 (176-210)||(19035424-19035458)
chr1 (204-246)||(47459711-47459753)
[»] chr7 (33 HSPs)
chr7 (24-239)||(28517142-28517358)
chr7 (39-237)||(4501296-4501495)
chr7 (20-246)||(43856903-43857130)
chr7 (96-246)||(21326766-21326916)
chr7 (20-245)||(45613693-45613919)
chr7 (108-246)||(32584630-32584768)
chr7 (79-243)||(982981-983145)
chr7 (39-237)||(5825311-5825508)
chr7 (134-246)||(19277322-19277434)
chr7 (95-246)||(27521500-27521651)
chr7 (96-246)||(2904394-2904544)
chr7 (79-239)||(3676675-3676836)
chr7 (150-246)||(30216040-30216136)
chr7 (111-246)||(22198015-22198150)
chr7 (111-246)||(22239671-22239806)
chr7 (108-246)||(24527618-24527756)
chr7 (161-246)||(42295177-42295262)
chr7 (146-242)||(10905151-10905246)
chr7 (166-237)||(40726478-40726549)
chr7 (102-238)||(9281066-9281201)
chr7 (102-238)||(9292037-9292172)
chr7 (108-196)||(33202405-33202493)
chr7 (126-246)||(34067820-34067939)
chr7 (254-315)||(43856811-43856872)
chr7 (108-231)||(25186876-25186999)
chr7 (108-237)||(34772819-34772946)
chr7 (126-194)||(1249667-1249735)
chr7 (38-239)||(38839360-38839564)
chr7 (252-315)||(30216165-30216228)
chr7 (254-320)||(27521403-27521469)
chr7 (161-233)||(43383211-43383283)
chr7 (195-243)||(48539213-48539261)
chr7 (254-320)||(45613951-45614017)
[»] chr3 (30 HSPs)
chr3 (79-244)||(44198798-44198963)
chr3 (20-246)||(53785738-53785965)
chr3 (103-239)||(46940705-46940841)
chr3 (40-246)||(7900887-7901094)
chr3 (24-246)||(39583084-39583307)
chr3 (23-246)||(49017992-49018216)
chr3 (140-244)||(37132971-37133075)
chr3 (96-246)||(52741439-52741590)
chr3 (122-246)||(26772787-26772911)
chr3 (112-246)||(4473090-4473224)
chr3 (79-246)||(13582539-13582705)
chr3 (96-223)||(37992384-37992511)
chr3 (125-246)||(5338672-5338796)
chr3 (175-240)||(38670887-38670952)
chr3 (108-239)||(38146092-38146223)
chr3 (169-246)||(32546824-32546901)
chr3 (126-246)||(3443270-3443390)
chr3 (126-246)||(38978757-38978877)
chr3 (167-246)||(7502010-7502090)
chr3 (152-239)||(54508367-54508455)
chr3 (175-237)||(51234654-51234716)
chr3 (152-223)||(43123197-43123268)
chr3 (254-320)||(13582442-13582508)
chr3 (254-320)||(38145988-38146054)
chr3 (180-237)||(52411903-52411960)
chr3 (244-288)||(7502109-7502153)
chr3 (253-321)||(46320025-46320093)
chr3 (24-70)||(29862003-29862049)
chr3 (254-316)||(46940882-46940944)
chr3 (167-239)||(35484691-35484763)
[»] scaffold0490 (1 HSPs)
scaffold0490 (79-246)||(6363-6529)
[»] chr2 (25 HSPs)
chr2 (20-246)||(41867759-41867986)
chr2 (20-236)||(23484789-23485006)
chr2 (35-246)||(2888545-2888753)
chr2 (20-246)||(4412917-4413144)
chr2 (96-237)||(5532457-5532598)
chr2 (20-243)||(19161634-19161858)
chr2 (79-239)||(9685326-9685486)
chr2 (108-246)||(28225029-28225167)
chr2 (20-246)||(17344667-17344894)
chr2 (96-205)||(44686490-44686598)
chr2 (149-229)||(1296031-1296111)
chr2 (167-243)||(13147096-13147175)
chr2 (96-237)||(27502400-27502540)
chr2 (161-242)||(34814812-34814893)
chr2 (170-233)||(18744956-18745019)
chr2 (108-237)||(3825764-3825894)
chr2 (176-246)||(33612555-33612625)
chr2 (191-245)||(2886638-2886692)
chr2 (161-239)||(5679314-5679392)
chr2 (254-320)||(17344570-17344636)
chr2 (254-320)||(41868017-41868083)
chr2 (196-243)||(20142753-20142800)
chr2 (24-173)||(9674946-9675096)
chr2 (254-312)||(13413291-13413349)
chr2 (171-224)||(44720374-44720427)
[»] scaffold0148 (1 HSPs)
scaffold0148 (96-246)||(33279-33428)
[»] scaffold0224 (1 HSPs)
scaffold0224 (95-245)||(18292-18441)
[»] scaffold0186 (1 HSPs)
scaffold0186 (96-246)||(10389-10543)
[»] scaffold0110 (1 HSPs)
scaffold0110 (20-246)||(47390-47617)
[»] scaffold1768 (1 HSPs)
scaffold1768 (39-243)||(54-259)
[»] scaffold0031 (1 HSPs)
scaffold0031 (144-237)||(49449-49542)
[»] scaffold0009 (1 HSPs)
scaffold0009 (108-246)||(103135-103272)
[»] scaffold0493 (1 HSPs)
scaffold0493 (177-246)||(8525-8594)
[»] scaffold0119 (1 HSPs)
scaffold0119 (134-218)||(16191-16275)
[»] scaffold0470 (1 HSPs)
scaffold0470 (150-246)||(7631-7727)
[»] scaffold0085 (1 HSPs)
scaffold0085 (161-214)||(37391-37444)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 3114015 - 3114351
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattagggg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114015 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattagggg 3114114  T
Q  120 ttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatacc 219  Q
    | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114115 tcggggcttttacggtaggacaggcagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatacc 3114214  T
Q  220 atttgtttttgacacttttggtttccttctacaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagat 319  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3114215 atttgtttttgacacttttggtttccttctacagagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagat 3114314  T
Q  320 ttgtct----ttcatgtgtgattattcttgatatata 352  Q
    ||||||    ||||||||| |||||||||||||||||    
T  3114315 ttgtcttctattcatgtgtaattattcttgatatata 3114351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 37873588 - 37873716
Alignment:
Q  118 ggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttata 217  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  37873588 ggttggggcttttacggtaggacagacagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttata 37873687  T
Q  218 ccatttgtttttgacacttttggtttcct 246  Q
    ||||||| ||||||||||||||| |||||    
T  37873688 ccatttgcttttgacacttttggcttcct 37873716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 35310704 - 35310477
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    |||||||||||| | ||| ||||||||| |||||  ||||||  ||||||| ||  ||| ||| |||||||   |  ||||||||||  |||| ||||||    
T  35310704 atcaacacttaggcttgcggatgttatgatgtacggatgggttggaggaaaacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggg 35310605  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35310604 gtcggggcttttacggtaggacagacaaccctaaaagatgcgtcaagcaaagtggccaaacatgagaaagcatgttctgacaatcaacatgcttttatac 35310505  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    ||| || |||||||||||| || |||||    
T  35310504 catctgcttttgacactttcggcttcct 35310477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 27336945 - 27336722
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| | ||| |||||||||||||||  ||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| |    
T  27336945 acacttaggcctgcggatgttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgg 27336846  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    ||||||||||  |||| |||||||||||||||||||| |||| |||||||| ||||||||||||| | |||||||||| |||||||  ||||||||||||    
T  27336845 gggcttttacaataggacagacagccctaaaagttgcgtcaagcaaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatt 27336746  T
Q  223 tgtttttgacacttttggtttcct 246  Q
    || ||||||||||| ||| |||||    
T  27336745 tgcttttgacacttgtggcttcct 27336722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 25663009 - 25663101
Alignment:
Q  145 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||    
T  25663009 agccctaaaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacacttt 25663101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 246
Target Start/End: Original strand, 32269663 - 32269875
Alignment:
Q  35 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 133  Q
    |||||||||||||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||| |||||| || ||| |||||| |    
T  32269663 tgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatg 32269762  T
Q  134 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 233  Q
    ||||| ||  || ||||||||| |||||||| |||||||| ||||||||||||||  |||||||||| |||||| | |||||||||||||| |||||| |    
T  32269763 gtaggacatgcaaccctaaaagctgcatcaaccaaagtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgata 32269862  T
Q  234 cttttggtttcct 246  Q
    |||| | ||||||    
T  32269863 ctttcgatttcct 32269875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 15291954 - 15292101
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  | |||||| | || ||| ||||| ||||| | |||||| |||||||||| || ||||||||||||||||||||||||||| | |||||    
T  15291954 tttcaccacttgttggattaagtgtcgggccttttgcggtatgacagacaaccctaaaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttc 15292053  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    ||||| ||||||||||||||||| |||||||||| |||||||| ||||    
T  15292054 tgacaatcaacatgtttttatacaatttgttttttacacttttagttt 15292101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 13166859 - 13166988
Alignment:
Q  117 gggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttat 216  Q
    ||||| ||||||||||||| || |||||| ||||||||  ||| |||| ||||||||| |||||||||||||| |||||||||| |||||||| ||||||    
T  13166859 gggttagggcttttacggtgggacagacaaccctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttat 13166958  T
Q  217 accatttgtttttgacacttttggtttcct 246  Q
    |||||||| |||||||||||| || |||||    
T  13166959 accatttgcttttgacactttcggcttcct 13166988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 237
Target Start/End: Original strand, 33691983 - 33692124
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| ||| ||| |||||||| ||| |||| |||||||||||||||||| ||| | ||||     
T  33691983 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacaggcaggcctaaaagctgcgtcaagcaaagtggccaaacatgacaaaacgtgtta 33692082  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||| |||||||| |||| ||||||||| ||||||||||||    
T  33692083 tgacaatcaacatgcttttgtaccatttgcttttgacacttt 33692124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 43115386 - 43115525
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||||||||||| | ||| |||| || |||| |||||||||| ||||     
T  43115386 tttcaccactcatgggattagaggtcggggcttttacggtaggatagacagccctaaaagttgcgt-aaataaagcggtcaaatatgagaaagcgtgttt 43115484  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacactt 236  Q
    ||||| |||||||| ||| ||| |||||| |||||||||||    
T  43115485 tgacaatcaacatgctttcatagcatttgcttttgacactt 43115525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 43129785 - 43129563
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttgg 123  Q
    |||||||| ||||||||||||||| |||||  |||| || ||||||| |  ||| |||  | |||||  |  ||||||||||  | ||||||||||| ||    
T  43129785 acacttaggcatgcagatgttatgatgtacggatggataggaggaaaaatgcatgtgtgaaattgactggggtttcaccacttgttggattaggggtcgg 43129686  T
Q  124 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 223  Q
      |||||||||| || ||  ||| |||||||| ||| |||| |||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||    
T  43129685 aacttttacggttggacattcagtcctaaaagatgcgtcaagcaaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgtttttctaccattt 43129586  T
Q  224 gtttttgacacttttggtttcct 246  Q
    | |||||||| ||| ||||||||    
T  43129585 gcttttgacattttcggtttcct 43129563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 38875766 - 38875676
Alignment:
Q  147 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||||||  |||||||||||||| | |||||||||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  38875766 ccctaaaaactgcatcaaacaaagcgaccaaacatgagaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacacttt 38875676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 14423857 - 14423716
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||||||||| || ||  |||| || ||||| ||| || ||||||||  ||| |||| ||||||| || ||||||||||||| |||||    
T  14423857 tttcaccacttgtgggattaggtgtcggacctttaaccgtaggacaggcaaccctaaaaaatgcgtcaagcaaagtgaccgaacatgagaaagcgtgttc 14423758  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  14423757 tgacaatcaacatgcttttataccatttgcttttgacacttt 14423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 35456192 - 35455985
Alignment:
Q  40 atgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 138  Q
    ||||||||||||||| ||||||| |||| ||| |  ||| ||| ||||||||| |  |||  |||||| | |||||||||||  || |||||||||||||    
T  35456192 atgttatggtgtacagatgggtaggaggtaaatatgcatgtgtggacttgaccggggttttgccactcgtaggattaggggtccggccttttacggtagg 35456093  T
Q  139 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 238  Q
    | ||  ||||| ||||||||  | ||  ||| ||| ||||||||||||||| |||||| ||| |||||||| ||||||||| |||| |||||||| ||||    
T  35456092 gtaggtagcccaaaaagttgtgttaagtaaaatggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttgacaatttt 35455993  T
Q  239 ggtttcct 246  Q
    || |||||    
T  35455992 ggcttcct 35455985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 433544 - 433371
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacact-catttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| ||||| |||||||||||||||| ||||||  |||||||   | ||| ||| ||||||||| |  |||||||||   |||| ||| |||| |    
T  433544 acacttaggcatgcggatgttatggtgtacagatgggttggaggaaaatatgcatgtgtggacttgaccggggtttcaccacctgtgggtttaagggtag 433445  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 196  Q
    ||||||||||||||||  ||||| || |||||| ||  |||| |||||||||||||||||||||||| ||||||    
T  433444 gggcttttacggtaggatagacaaccttaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttct 433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 26212564 - 26212644
Alignment:
Q  149 ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 229  Q
    ||||||||||| |||| |||||||||||||||||||||||| | |||||||  |||||||| |||||||||||||||||||    
T  26212564 ctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtattctgacgatcaacatgcttttataccatttgttttt 26212644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 34335440 - 34335375
Alignment:
Q  172 ggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    |||||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||||||||    
T  34335440 ggccaaacatgagaaagcgtgtcctgacaatcaacatgcttttataccatttgtttttgacacttt 34335375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 32230489 - 32230582
Alignment:
Q  150 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    |||||||||| |||| ||||||| ||||||||||||||   |||||||||| |||||| | ||||||||||| ||  || ||||||||||||||    
T  32230489 taaaagttgcgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaacaagcttttataccatctgcgttcgacacttttggttt 32230582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 42921802 - 42921726
Alignment:
Q  170 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||| |||||| |||||| | |||||||||| |||||||| |||||||||||||| || ||||||||| ||||||||    
T  42921802 gtggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcct 42921726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 430688 - 430638
Alignment:
Q  189 catgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  430688 catgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 37873747 - 37873805
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 312  Q
    |||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||||||    
T  37873747 agttcaaagggtcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgttta 37873805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 8859030 - 8858969
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    |||| |||||| | ||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  8859030 tcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtttttatatcatt 8858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 8100680 - 8100590
Alignment:
Q  147 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||||| | ||||||||  ||| ||| ||||||||||||| | |||| ||||| |  ||||| ||||||||||||||||| |||||||||    
T  8100680 ccctaaacgctgcatcaagtaaaatggtcaaacatgagaaaacgtgttgtgacaatttacatgcttttataccatttgtttgtgacacttt 8100590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 14436605 - 14436536
Alignment:
Q  167 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||||||||||||||| ||| | |||||| |   |||||||||||||||| |||||||||||||||| ||||    
T  14436605 aaagtggccaaacatgaaaaaacgtgttctaa---tcaacatgtttttatatcatttgtttttgacacctttg 14436536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 14723269 - 14723319
Alignment:
Q  193 ttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    |||||||| |||||||| ||||||| ||||||||||| |||||||||||||    
T  14723269 ttctgacaatcaacatgcttttatatcatttgttttttacacttttggttt 14723319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 23023591 - 23023527
Alignment:
Q  256 ttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||| ||||||||| | |||||||||  |||| |||||  |||||||||||||||||||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagatt 23023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 32269905 - 32269972
Alignment:
Q  253 aagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    ||||||||| ||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  32269905 aagttcaaaaggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 32269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 9829331 - 9829423
Alignment:
Q  145 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||||||||||||| | || ||||||||| || ||||| |||   |||| ||||| |||||||| ||||||||||||| | |||||||||||||    
T  9829331 agccctaaaagttgcgt-aagcaaagtggctaa-catgataaaatgtgttttgacaatcaacatgcttttataccatttatatttgacacttttg 9829423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 26577407 - 26577472
Alignment:
Q  175 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 240  Q
    ||||||| ||||||  ||||| |||  ||||||||||||||||| |||||| ||| ||||||||||    
T  26577407 caaacataagaaagtgtgttccgactatcaacatgtttttatacaatttgtgtttcacacttttgg 26577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 15292124 - 15292192
Alignment:
Q  245 cttctacaaa-gttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 312  Q
    |||||||||| ||||||| ||||||||| | |||||||| | |||| |||||  |||||||||||||||    
T  15292124 cttctacaaaagttcaaaaggtcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgttta 15292192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 31847339 - 31847116
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| | ||||||| |||||||||||| |||| |  ||||||| ||  ||| ||| |||||||| ||  ||||||||||  |||| |||||||| |    
T  31847339 acacttaggcctgcagatattatggtgtacagatggattggaggaaaacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgg 31847240  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    |||||||||| ||||| ||| |||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    
T  31847239 gggcttttacagtaggacaggcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatt 31847140  T
Q  223 tgtttttgacacttttggtttcct 246  Q
    || ||||||||||||||| |||||    
T  31847139 tgcttttgacacttttggcttcct 31847116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 53619842 - 53619622
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    |||||||||||| | |||| ||||||||||||||  ||| ||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||| |    
T  53619842 atcaacacttaggcctgcatatgttatggtgtacggatgagttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttagag 53619743  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||||||||||| ||||| ||| || ||||||||| ||| |||| |||||||||||||||||||||| | |||||||||| |||||||| ||||||||    
T  53619742 gtgggggcttttacagtaggacaggcaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttatac 53619643  T
Q  219 catttgtttttgacacttttg 239  Q
    |||||||||||||||||||||    
T  53619642 catttgtttttgacacttttg 53619622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 50000780 - 50000998
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| | ||| |||||||||||||||  ||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| | |||||| |    
T  50000780 acacttaggcctgcggatgttatggtgtacggatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgg 50000879  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg-tttttataccat 221  Q
    |||||||||||||||| |||||||| ||||||| ||| |||| |||||||| ||||||||||||||| |||||||||| |||||||| |||| |||| ||    
T  50000880 gggcttttacggtaggacagacagctctaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaat 50000979  T
Q  222 ttgtttttgacacttttgg 240  Q
    ||| |||||||||||||||    
T  50000980 ttgcttttgacacttttgg 50000998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 55933417 - 55933531
Alignment:
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    |||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||| ||| |||||||| ||||||||||||    
T  55933417 gggcttttacggtaggacagtcagccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtttgttctaacaatcaacatgcttttataccatt 55933516  T
Q  223 tgtttttgacacttt 237  Q
    || ||||||||||||    
T  55933517 tgcttttgacacttt 55933531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 110 - 246
Target Start/End: Original strand, 56462049 - 56462184
Alignment:
Q  110 ggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg 209  Q
    ||||||||||| | | |||||||||| |   ||||  ||||||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  56462049 ggattaggggtcgagacttttacggttgtatagaccaccctaaaagttgcgtcaaacaaagtggc-aaacatgataaagcgtgttctgacaatcaacatg 56462147  T
Q  210 tttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||||||||||| |||||||||||||||||    
T  56462148 tttttataccatttgttttagacacttttggtttcct 56462184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 132639 - 132414
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacact-catttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||| | |||||||||||||||||||||| ||  ||| |||||||   | ||| |||  |||||||  |  ||||||||||  | ||||||||||| |    
T  132639 acacttcggcatgcagatgttatggtgtacagatacgtaggaggaaaatatgcatgtgtgaacttgactggggtttcaccacttgttggattaggggtcg 132540  T
Q  123 gggcttttacggt--agggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatacca 220  Q
    || ||||||||||  ||| ||| |||||||||||| ||| |||| |||| |||| |||||||||||| | |||||||||| |||||||| ||||||||||    
T  132539 ggacttttacggtgtaggacaggcagccctaaaagctgcgtcaagcaaaatggcaaaacatgagaaatcgtgttctgacaatcaacatgcttttatacca 132440  T
Q  221 tttgtttttgacacttttggtttcct 246  Q
    ||||||||| ||||||| ||||||||    
T  132439 tttgttttttacactttcggtttcct 132414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 23255828 - 23255747
Alignment:
Q  151 aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgac 232  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||    
T  23255828 aaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaattaacatgcttttataccatttgtttttgac 23255747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 48656866 - 48656979
Alignment:
Q  124 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 223  Q
    ||||||||| ||| | |||||||||||||||||| ||||||  ||| ||| ||||||||||||||  |||| || || |||| |||||||||||||||||    
T  48656866 ggcttttacagtatgacagacagccctaaaagtttcatcaagtaaaatggacaaacatgagaaagtgtgttatgtcaatcaaaatgtttttataccattt 48656965  T
Q  224 gtttttgacacttt 237  Q
    ||||||||||||||    
T  48656966 gtttttgacacttt 48656979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 25504546 - 25504324
Alignment:
Q  23 aacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggtt 121  Q
    |||||| || ||||| |||||||||||||||  ||||||| ||| ||| ||  ||| | ||||||||||     ||||||||||  |||||||||| ||     
T  25504546 aacactcagacatgcggatgttatggtgtacggatgggtaggagaaaaacatgcatgtatagacttgactgaggtttcaccacttgtgggattaggcgtc 25504447  T
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
     || ||||||||||| | ||| || ||||||| |||||||||| |||| ||| ||||||||||||| | |||||| ||| || ||||||||||||||| |    
T  25504446 aggccttttacggtatgacaggcaaccctaaa-gttgcatcaagcaaa-tggtcaaacatgagaaaacgtgttctaacaatcgacatgtttttataccgt 25504349  T
Q  222 ttgtttttgacacttttggtttcct 246  Q
    ||| |||||||| ||||||||||||    
T  25504348 ttgcttttgacatttttggtttcct 25504324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 30940697 - 30940816
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    |||||||  |||| |||||| ||||||||||||| ||||  ||||||| ||||||||||||||| |||||||||| |||||||| |||||||||| |||     
T  30940697 cttttaccataggacagacaaccctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacca-ttgc 30940795  T
Q  226 ttttgacacttttggtttcct 246  Q
    |||||||||||| | ||||||    
T  30940796 ttttgacactttcgatttcct 30940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 12918326 - 12918441
Alignment:
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||||||||| ||||||| ||||| | |||||||||| ||||||   |||||||| ||    
T  12918326 ggggcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactat 12918425  T
Q  222 ttgtttttgacacttt 237  Q
    ||  ||||||||||||    
T  12918426 ttacttttgacacttt 12918441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 26521655 - 26521517
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    |||||||||||||  |  |||||| |||||| || ||| ||||||||||||| |||||||||||||| |||||||| ||| | |||| ||||| ||||||    
T  26521655 tgggattaggggtcagaccttttatggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggctaaacatgaaaaaacgtgttatgacaatcaaca 26521556  T
Q  208 tgtttttataccatttgtttttgacacttttggtttcct 246  Q
    || ||||||| ||| || |||  ||||||||||||||||    
T  26521555 tgcttttatatcatatgctttcaacacttttggtttcct 26521517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 50462908 - 50463025
Alignment:
Q  130 tacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 229  Q
    ||||||||| ||||||||| |||||||||| |||| |||  || |||||||||||||||  | ||| |||| |||||||| ||| |||||||||| ||||    
T  50462908 tacggtaggacagacagccttaaaagttgcgtcaagcaagatgaccaaacatgagaaagtgtcttccgacaatcaacatgctttcataccatttgctttt 50463007  T
Q  230 gacacttttggtttcctt 247  Q
    |||||||||| |||||||    
T  50463008 gacacttttgatttcctt 50463025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 600651 - 600770
Alignment:
Q  127 ttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtt 226  Q
    |||||| ||||| |||||| |||||||||||   |||| ||||||| |||||||||||||| | |||||| ||| | |||||| |||||||||||||| |    
T  600651 ttttactgtaggacagacaaccctaaaagttatgtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgct 600750  T
Q  227 tttgacacttttggtttcct 246  Q
    |||| |||||| ||||||||    
T  600751 tttgtcactttcggtttcct 600770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 34107674 - 34107774
Alignment:
Q  148 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgt--tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 245  Q
    ||||||| |||| |||||| |||||||||||||||||||| | |||  || || | |||||||||||||||||||||||||||||||||||| | |||||    
T  34107674 cctaaaaattgcgtcaaacgaagtggccaaacatgagaaaacgtgtgttcagataatcaacatgtttttataccatttgtttttgacactttcgatttcc 34107773  T
Q  246 t 246  Q
    |    
T  34107774 t 34107774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 53170703 - 53170573
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    ||||||||||||  |  ||||||||||| |||||||||| || ||  ||||||| ||| | ||| ||||||||||||| |  | |   ||||| ||||||    
T  53170703 tgtagacttgactggggtttcaccactcgtgggattaggtgtcggaccttttacagtatgacaggcagccctaaaagtcgtgttaggtaaagtagccaaa 53170604  T
Q  179 catgagaaagcatgttctgacagtcaacatg 209  Q
    ||||||||||| |||||||||||||||||||    
T  53170603 catgagaaagcgtgttctgacagtcaacatg 53170573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 45661691 - 45661623
Alignment:
Q  252 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    ||||||||||||||||| |||||||||||||||||||  |||||  ||||| |||||||||||| ||||    
T  45661691 aaagttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggatt 45661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 12053562 - 12053451
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    ||||||| ||||| || ||||| ||||||| ||| ||||||||||| | ||||||||||||| | |||||| ||| |||| | ||||||||| ||||||     
T  12053562 cttttacagtaggacaaacagctctaaaagctgcgtcaaacaaagttgtcaaacatgagaaatcgtgttctaacaatcaaaacgtttttatatcatttgc 12053463  T
Q  226 ttttgacacttt 237  Q
    ||| ||| ||||    
T  12053462 tttcgactcttt 12053451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 16957707 - 16957580
Alignment:
Q  110 ggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatg 209  Q
    ||||||||||| ||| || |||| |||||  || ||| |||||||||||| |  | |||| || |||||||||||||||  || ||||| | ||||||||    
T  16957707 ggattaggggtcgggcctcttacagtaggataggcagtcctaaaagttgcgtagagcaaaatgaccaaacatgagaaagtgtgctctgataatcaacatg 16957608  T
Q  210 tttttataccatttgtttttgacacttt 237  Q
     || ||||||||||| ||||||||||||    
T  16957607 cttatataccatttgcttttgacacttt 16957580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 3330206 - 3330078
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    |||||||||||| |||||||||||||||||||||  |||| |  |||| ||||   ||| ||| ||||||||  |  ||||||||||  |||| ||||||    
T  3330206 atcaacacttaggcatgcagatgttatggtgtacggatggattggaggaaaacgtgcatgtgtggacttgactggggtttcaccacttgtgggtttaggg 3330107  T
Q  119 gttggggcttttacggtagggcagacagc 147  Q
    || ||||||||||||||||| ||| ||||    
T  3330106 gtgggggcttttacggtaggacaggcagc 3330078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 43849350 - 43849426
Alignment:
Q  170 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||| |||||||| ||||| || |  ||||||| |||||||| |||||| |||||||||||||| |||||    
T  43849350 gtggccaaacacgagaaagcgtgttcagataaccaacatgcttttatactatttgtgtttgacacttttggcttcct 43849426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 24720017 - 24719970
Alignment:
Q  192 gttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  24720017 gttctgacaatcaacatgtttttatatcatttgtgtttgacacttttg 24719970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 50483211 - 50483274
Alignment:
Q  183 agaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||| | |||||||| |||||||| |||||||||||||| ||| |||||||| ||||||||    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcct 50483274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 38535500 - 38535610
Alignment:
Q  82 agacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacat 181  Q
    ||||||||| ||  |||||| |||  ||||||| | ||||||||||||||  ||||  |||||||| ||||||||||  || |||||||||| |||| ||    
T  38535500 agacttgactagggtttcactacttgtgggatttgaggttggggcttttaatgtagaacagacagctctaaaagttgtgtctaacaaagtggtcaaatat 38535599  T
Q  182 gagaaagcatg 192  Q
     ||||||||||    
T  38535600 aagaaagcatg 38535610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 46440869 - 46440967
Alignment:
Q  148 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||  | ||||||||||||| ||||||| | ||||  |||||| ||| | |||| ||||||||| |||||| |||||||||||| || |||||    
T  46440869 cctaaaagtaacgtcaaacaaagtggtcaaacataaaaaagtgtgttctaacaattaacacgtttttatatcatttgcttttgacactttcggcttcct 46440967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 28740020 - 28739943
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt-ttttataccatttgtttttgacacttt 237  Q
    ||||| |||||||||||||| ||||||   |||| ||||||| ||||||| ||||||||||||| | |||||||||||    
T  28740020 tcaaataaagtggccaaacacgagaaattgtgttgtgacagttaacatgtgttttataccatttatgtttgacacttt 28739943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 3330077 - 3330025
Alignment:
Q  194 tctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||    
T  3330077 tctgacaatcaacatgcttttatactatttgcttttgacacttttggcttcct 3330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 30940841 - 30940897
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtt 310  Q
    |||||||| ||||||||| ||||||||||||  ||| |||||| |||||||||||||    
T  30940841 agttcaaaaggtcatgcataacaatgtcatatatcctaggtctatgaatgttgtgtt 30940897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 7536594 - 7536649
Alignment:
Q  191 tgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| |||  |||||||    
T  7536594 tgttttgacaatcaacatgtttttatacaatttgtttttgacaatttcagtttcct 7536649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 4419261 - 4419195
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||||||| ||||| |||||||| ||  |||| |||||  |||||||||||||||||| ||||    
T  4419261 agttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgatt 4419195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 46391323 - 46391369
Alignment:
Q  176 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||||||    
T  46391323 aaacacgagaaaacatgttctcacagccaacatgtttttataccatt 46391369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 52022228 - 52022166
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 223  Q
    |||| ||||||| ||||| |||||| |   ||||||||||||| |||||||||||||||||||    
T  52022228 tcaatcaaagtgaccaaaaatgagagaaagtgttctgacagtcgacatgtttttataccattt 52022166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 6865828 - 6865889
Alignment:
Q  176 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||| |||||| | |||||||||  |||||||| ||||||| |||||| ||||||||||||    
T  6865828 aaacacgagaaaacgtgttctgactatcaacatgcttttatatcatttgcttttgacacttt 6865889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 45386060 - 45386133
Alignment:
Q  167 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 240  Q
    ||||||| ||||||| ||||||| |||||||||| ||||  | ||||||||||||||   ||||| ||||||||    
T  45386060 aaagtggtcaaacataagaaagcgtgttctgacaatcaatttctttttataccatttacatttgaaacttttgg 45386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 35739838 - 35740064
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    |||||||||||| ||||||||||||||||||||  |||||||| ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||||||| ||    
T  35739838 atcaacacttaggcatgcagatgttatggtgtatgaatgggtaggaggaaaacatgcatgtgtggacttgactggggtttcaccactagtgggattaagg 35739937  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
     | ||| ||||||||||||| |||||| ||||||||||||  | || ||||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  35739938 -tcgggccttttacggtaggacagacatccctaaaagttgtgttaagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttatac 35740036  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
     ||| | ||||||||||||  |||||||    
T  35740037 aattagcttttgacactttcagtttcct 35740064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 38815471 - 38815332
Alignment:
Q  98 tcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctg 197  Q
    ||||||||  ||||||||||||| |||||||||| |||||| ||||||||||||||||   |  |||||||||||||||||||||||||||| |||||||    
T  38815471 tcaccacttgtgggattaggggtcggggcttttatggtaggacagacagccctaaaagccacgccaaacaaagtggccaaacatgagaaagcgtgttctg 38815372  T
Q  198 acagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||| |||||||| |||||||||||||| ||||||||||||    
T  38815371 acaatcaacatgcttttataccatttgcttttgacacttt 38815332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 39434846 - 39434703
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| |||||||| | ||||||||| ||||| |||  ||| ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  39434846 tttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttc 39434747  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  39434746 tgacaatcaacatgcttttataccatttgtttttgacacttttg 39434703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 500406 - 500256
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||||||||| || ||| ||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||| | |||||    
T  500406 tttcaccacttgtgggattaggtgtcgggccttttacggtaggaccgacagccctaaaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgttc 500307  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| |||||||| |||||||||||||  |||||||| ||| ||||||||    
T  500306 tgacaatcaacatgcttttataccatttacttttgacattttcggtttcct 500256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 246
Target Start/End: Original strand, 25021670 - 25021892
Alignment:
Q  25 cacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttgg 123  Q
    ||||||| | |||||||||||||||||||  ||||||| ||||||| ||  ||| ||| ||||||||| |  ||||||||||  ||||||||||||| |     
T  25021670 cacttaggcctgcagatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtggacttgaccggagtttcaccacttgtgggattaggggtcga 25021769  T
Q  124 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 223  Q
     | |||||| ||| | || ||||||||||||||||  |||| ||||||||  ||| |||||||||  |||||| ||| ||||||||||||||||||||||    
T  25021770 tgtttttacagtatgacatacagccctaaaagttgtgtcaagcaaagtggtgaaatatgagaaagtgtgttctcacaatcaacatgtttttataccattt 25021869  T
Q  224 gtttttgacacttttggtttcct 246  Q
      |||||||| |||||| |||||    
T  25021870 tcttttgacatttttggcttcct 25021892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 3188148 - 3187998
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagcc-ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 194  Q
    ||||||||||  |||| |||||| | ||||||||||||||||| |||  |||| |||||||||||||||| ||||||||| ||||||||| |||| ||||    
T  3188148 tttcaccacttgtgggtttaggg-tcggggcttttacggtaggacaggaagcctctaaaagttgcatcaagcaaagtggcaaaacatgaggaagcgtgtt 3188050  T
Q  195 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||| |||||||||||||| |||||| ||||| || |||||    
T  3188049 ctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcct 3187998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 24125224 - 24125057
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    ||||||||||||  |  ||||||||||  |||||||| | || | | |||||||||| || ||  |||||||||||| |||||||| |||| ||||||||    
T  24125224 tgtagacttgactggggtttcaccacttgtgggattatgcgtcgtgccttttacggtgggacaagcagccctaaaagctgcatcaagcaaaatggccaaa 24125125  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||| || ||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||    
T  24125124 catgagaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcct 24125057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 6592724 - 6592604
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    |||||||| ||||  |||||| | |||||| ||| |||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||| ||||||||     
T  6592724 cttttacgataggatagacagtcgtaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgc 6592625  T
Q  226 ttttgacacttttggtttcct 246  Q
    ||||||||||||  |||||||    
T  6592624 ttttgacactttcagtttcct 6592604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 8620047 - 8619849
Alignment:
Q  37 cagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggta 136  Q
    ||||||||||||||||| ||||||||||||||||     || |||  |||||||  |  ||||||||||  ||||||||| | | | | |||||||| ||    
T  8620047 cagatgttatggtgtacgaatgggtaagaggaaa-----atgtgtgaacttgactggggtttcaccacttgtgggattagagatcgtgacttttacgata 8619953  T
Q  137 gggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 236  Q
    |  |||||||||||||||||||| ||||  ||| ||| ||||||||| ||||| | || ||||| ||||| || ||||||||||||||||||| ||| ||    
T  8619952 gaacagacagccctaaaagttgcgtcaagtaaaatggtcaaacatgaaaaagcgtattttgacaatcaacgtgcttttataccatttgtttttaacattt 8619853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 10189707 - 10189572
Alignment:
Q  111 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 210  Q
    |||||||||||  |||||||| |||||| || |||  ||||||||||||  |||  ||||| | |||||| ||||||||||||||||||| |||||||||    
T  10189707 gattaggggttaaggcttttatggtaggacatacattcctaaaagttgcgccaattaaagtagtcaaacaagagaaagcatgttctgacaatcaacatgt 10189608  T
Q  211 ttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||| ||||||  ||||||| |||||| |||||    
T  10189607 ttttatatcatttgcatttgacatttttggcttcct 10189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 4073685 - 4073571
Alignment:
Q  125 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 224  Q
    ||||||||||| |  |||||| ||||||||||||||||||||||||||| |||||| |||||| | |||| |  || |||||||| |||||||| |||||    
T  4073685 gcttttacggtggaacagacaaccctaaaagttgcatcaaacaaagtggtcaaacaagagaaaacgtgttttaccaatcaacatgattttatacaatttg 4073586  T
Q  225 tttttgacacttttg 239  Q
      |||||||||||||    
T  4073585 catttgacacttttg 4073571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 8882441 - 8882371
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttga 231  Q
    |||| |||||||||||||||||||||||| |||||||||| |||| ||| ||||| |||||||||||||||    
T  8882441 tcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaatatgcttttaaaccatttgtttttga 8882371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 28196324 - 28196228
Alignment:
Q  143 acagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||| |||||||  ||||||||  |||| ||| |||||||||||||  |||| ||| | | ||||||||||||||||||||||||||||||||||||    
T  28196324 acagtcctaaaaactgcatcaagtaaagcggctaaacatgagaaagtgtgttatgataataaacatgtttttataccatttgtttttgacacttttg 28196228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 37517243 - 37517163
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaac 206  Q
    ||||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||  ||||| |||| |||||    
T  37517243 cttttaccgtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatgagaaagggtgttccgacaatcaac 37517163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 25021919 - 25021982
Alignment:
Q  250 acaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 313  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||    
T  25021919 acaaagttcaaagggtcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttac 25021982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 42922103 - 42922273
Alignment:
Q  144 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    ||||| |||||||||| ||||||||| ||| ||||  ||||||| | |||| ||||| |||| ||| ||||| | ||||||  |||||||||||||| ||    
T  42922103 cagccataaaagttgcgtcaaacaaaatggtcaaatttgagaaaacgtgttttgacaatcaaaatgcttttaaatcatttgcctttgacacttttggctt 42922202  T
Q  244 ccttctacaaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 315  Q
    |||   | | |||| |||  || |||||||||||||||||||||||  ||||  ||||| ||||||||||||    
T  42922203 cctaacatagagtttaaa-agttatgcacaacaatgtcataactcctcggtccatgaatattgtgtttacga 42922273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 6618409 - 6618313
Alignment:
Q  150 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||| ||||| | ||| |  |||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||  |||||||    
T  6618409 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcct 6618313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 11611199 - 11611275
Alignment:
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgac 199  Q
    ||||||||||| || |  ||||| ||||||||||||  ||||| |||||||||||| ||||||||||||||||||||    
T  11611199 gggcttttacgataagatagacatccctaaaagttgtgtcaaataaagtggccaaatatgagaaagcatgttctgac 11611275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 10556283 - 10556361
Alignment:
Q  158 gcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 236  Q
    |||||||| ||||||| ||||||||||||| ||| |||||| | ||||||||||||||||  | |||| ||||||||||    
T  10556283 gcatcaaagaaagtggtcaaacatgagaaaacatattctgaaaatcaacatgtttttatataaattgtatttgacactt 10556361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 38815292 - 38815226
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||||||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  38815292 agttcaaagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 38815226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 4700002 - 4699919
Alignment:
Q  141 agacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    ||||| |||| |||||||  |||| ||||||||||||||||||  |||| |||||| ||| | |||||||||||| |||||||||    
T  4700002 agacaaccctcaaagttgtgtcaagcaaagtggccaaacatga-taagcgtgttctcacaattaacatgtttttacaccatttgt 4699919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 43824056 - 43824017
Alignment:
Q  208 tgtttttataccatttgtttttgacacttttggtttcctt 247  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  43824056 tgtttttataccatttgcttttgacacttttggcttcctt 43824017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 39671170 - 39671232
Alignment:
Q  167 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 229  Q
    |||||||||||||  |||||||| |||| ||||| | ||||||||||||||| |||| |||||    
T  39671170 aaagtggccaaaccagagaaagcgtgttttgacaattaacatgtttttatacaatttattttt 39671232  T

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Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 8390291 - 8390234
Alignment:
Q  124 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacat 181  Q
    |||||||| | ||||||||||| |||||||| |||| | |||||||||| ||||||||    
T  8390291 ggcttttatgatagggcagacaaccctaaaaattgcgtaaaacaaagtgaccaaacat 8390234  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 33220639 - 33220789
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||||||| |||      
T  33220639 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacagctctaaaagctgcatcaagcaaagtggccaaacatgagaaagcgtgtgt 33220738  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  33220739 tgacaatcaacatgcttttataccatttgcttttgacactttcggcttcct 33220789  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 17249262 - 17249383
Alignment:
Q  125 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 224  Q
    |||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||||| ||||||||||||||    
T  17249262 gcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttg 17249361  T
Q  225 tttttgacacttttggtttcct 246  Q
     ||||||||||||||| |||||    
T  17249362 cttttgacacttttggcttcct 17249383  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 959759 - 959609
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| || ||| ||||||||||||  |||| ||||||||| || ||||||||| | |||||    
T  959759 tttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaaccctaaaagttgtgtcaagcaaagtggctaaccatgagaaaacgtgttc 959660  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  959659 tgacaatcaacatgtctttataccatttgtttttgacattttcggtttcct 959609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 357572 - 357788
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    ||||||||  |||||||||||||||||||   ||||||  ||| ||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| |    
T  357572 acacttaggtatgcagatgttatggtgtatggatgggttggagcaaaacatgcatgtgtggacttgactggagtttcaccacttgtgggtttaggggtcg 357671  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    | |||||||||||||| ||| |||||||||||| | | |||| |||||||||||||||||||||||| |||||||||| | |||||| ||||||| | ||    
T  357672 gtgcttttacggtaggacaggcagccctaaaagcttcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatgaacatgcttttataacctt 357771  T
Q  223 tgtttttgacacttttg 239  Q
    ||||||| |||||||||    
T  357772 tgtttttaacacttttg 357788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 45605 - 45753
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||||||||| || ||  ||||||| ||||| ||| |||| ||||||| |||||||| |||||||  ||||||||||||| | |||||    
T  45605 tttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaggcagctctaaaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttc 45704  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 244  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||    
T  45705 tgacaatcaacatgcttttattccatttgtttttgacactttcggtttc 45753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 4206466 - 4206674
Alignment:
Q  39 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 137  Q
    |||||||||||||||||||||||  ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||||||||||  |  |  ||||||||||||    
T  4206466 gatgttatggtgtacaaatgggttggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggcatcagaccttttacggtag 4206565  T
Q  138 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    | ||  ||||| ||||||| || |||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||||| |||||| ||||||||||||    
T  4206566 gacatgcagccttaaaagtggcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatgaacatgcttttatatcatttgcttttgacacttt 4206665  T
Q  238 tggtttcct 246  Q
     || |||||    
T  4206666 cgggttcct 4206674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 34304675 - 34304525
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| ||||| || |||||||||||||| || |||  ||||||||||| ||| |||| |||| |  |||||||||||||||| |||||    
T  34304675 tttcaccacttgtgggtttaggagtcggggcttttacggttggacagctagccctaaaagctgcgtcaagcaaaataaccaaacatgagaaagcgtgttc 34304576  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| |||||||| |||||||||||||| |||||||||||| || |||||    
T  34304575 tgacaatcaacatgcttttataccatttgcttttgacactttgggcttcct 34304525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 32115945 - 32115650
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || | ||| |||||||||||||||| ||| ||| ||||||| ||  ||| ||||||||||||| |  ||||| |||| |||||||||||     
T  32115945 atcaacactcaggcctgcggatgttatggtgtacagatgagtaggaggaaaacatgcatgtgtagacttgaccggggtttcatcacttatgggattaggt 32115846  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || |||  ||||||| |||| ||  ||||| |||||||||| ||||||||||||||||||||||||||||  ||||        ||||||| ||||| ||    
T  32115845 gtcgggcattttacgttaggacatgcagccttaaaagttgcgtcaaacaaagtggccaaacatgagaaag--tgtt-------gcaacatgcttttagac 32115755  T
Q  219 catttgtttttga-cacttttggtttccttctacaa--agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 315  Q
    |||||| |||||| ||    || |  ||||||||||  |||||||| ||||||||| |||||||||||  |||| |||||  ||||||||||||||||||    
T  32115754 catttgcttttgaccatggctgttgaccttctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacga 32115655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 28008915 - 28009062
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||  || ||||||||| | | |||| ||||| || ||||||||||||||| |||||    
T  28008915 tttcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagctacgtcaagcaaagcggtcaaacatgagaaagcttgttc 28009014  T
Q  196 tgacagtc---aacatgtttttataccatttgtttttgacacttttgg 240  Q
    | ||| ||   || ||| |||||||||||||| |||||||||||||||    
T  28009015 taacaatcaagaatatggttttataccatttgcttttgacacttttgg 28009062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 34415615 - 34415465
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||| | | |||||||||||  || |||||||||||||  || || || || ||| ||| |||| |||| |||| |||||||||||||  |||||    
T  34415615 tttcaccacacgttggattaggggtcaggacttttacggtaggataggcatccttacaagctgcgtcaagcaaaatggcgaaacatgagaaagtgtgttc 34415516  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| |||||||| |||||| |||||||||||||||||||| ||||||||    
T  34415515 tgacaatcaacatgcttttatgccatttgtttttgacactttaggtttcct 34415465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 12401572 - 12401384
Alignment:
Q  35 tgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 133  Q
    |||| ||||||||||||||  ||||||| ||||||| ||  ||| |||||||||||   |  |||||||||| ||||||||| || |  ||||||||| |    
T  12401572 tgcaaatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatg 12401473  T
Q  134 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    ||||| ||  |||| ||||||||||| ||||||||||||||||||||| ||| ||| |||| ||  | |||||||| || |||||||||    
T  12401472 gtaggacaagcagcactaaaagttgcgtcaaacaaagtggccaaacataagatagcgtgttttgctaatcaacatgcttatataccatt 12401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 34169021 - 34168913
Alignment:
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
    ||||||||||| ||||| ||  || |||||||| |||| |||| |||||||||||||||||||||||||||||  ||||  ||||||| |||||||||||    
T  34169021 ggggcttttaccgtaggacatgcaaccctaaaatttgcgtcaagcaaagtggccaaacatgagaaagcatgtttggacaagcaacatgcttttataccat 34168922  T
Q  222 ttgtttttg 230  Q
    ||| |||||    
T  34168921 ttgcttttg 34168913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 140 - 246
Target Start/End: Complemental strand, 24016472 - 24016366
Alignment:
Q  140 cagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||||| || |||||||||||||||  ||| | | ||||||||||||||| |||||| ||| ||||||||||||||||||||||| | |||| | |||||    
T  24016472 cagacaaccgtaaaagttgcatcaagtaaaatagtcaaacatgagaaagcttgttctcacaatcaacatgtttttataccatttgctattgatagttttg 24016373  T
Q  240 gtttcct 246  Q
    |||||||    
T  24016372 gtttcct 24016366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 34554217 - 34554343
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    ||||||||||| |  |||||||||  ||||| |||||| | ||||||||||| |||| ||||  | |||||||||||||||| |||||||| | |||| |    
T  34554217 tgggattagggatcagggcttttaaagtaggtcagacaacactaaaagttgcgtcaagcaaaacgaccaaacatgagaaagcgtgttctgataatcaaga 34554316  T
Q  208 tgtttttataccatttgtttttgacac 234  Q
    ||||||||||||||||  |||||||||    
T  34554317 tgtttttataccatttacttttgacac 34554343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 4165920 - 4166000
Alignment:
Q  166 caaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||| |||||||||||||| |||||||||| |||||||| ||||||| |||||| |||||||||||| || |||||    
T  4165920 caaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcct 4166000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 29337938 - 29338147
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| | ||||||||||||||||| || ||||||| ||||||| ||  ||| ||| ||||||| |    ||| |||||||    |||||| ||| |    
T  29337938 acacttaggcctgcagatgttatggtgtgcagatgggtaggaggaaaacatgcatgtgtggacttgatcgaggttttaccactc----gattagtggtcg 29338033  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    |||||||||||||||| || |||  | |||||| ||  |||| |||||  ||||||||||||||| | |||||| ||| |||||||| | ||||||||||    
T  29338034 gggcttttacggtaggacaaacaatcataaaagatgtgtcaagcaaagctgccaaacatgagaaaacgtgttctaacaatcaacatgctcttataccatt 29338133  T
Q  223 tgtttttgacactt 236  Q
    || |||||||||||    
T  29338134 tgcttttgacactt 29338147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 28543628 - 28543413
Alignment:
Q  23 aacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggtt 121  Q
    |||||| || ||||||||||||||| |||||| |||| || ||||||| ||  ||| ||| || |||||     ||||||||||  ||||||||| |||     
T  28543628 aacactcaggcatgcagatgttatgatgtacagatggataggaggaaaacatgcatgtgtggatttgactgaggtttcaccacttgtgggattagaggtc 28543529  T
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
     || ||||||||||| | ||| ||||| ||||||| || |||| |||||||||||||||||||||| | |||| ||| | |||  ||| | |||||| ||    
T  28543528 aggacttttacggtaagacaggcagccttaaaagtcgcgtcaagcaaagtggccaaacatgagaaatcgtgttttgaaaatcactatgctcttatactat 28543429  T
Q  222 ttgtttttgacacttt 237  Q
    ||| ||||||||||||    
T  28543428 ttgattttgacacttt 28543413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 20693456 - 20693610
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttgg 123  Q
    |||||||| | ||||||| |||||||||||| ||||||| |||||||   |  | |||  |||||| |||  ||||||||||| ||||||||| |||  |    
T  20693456 acacttaggcctgcagatattatggtgtacagatgggtaggaggaaaacatgctatgtgaacttgatcagggtttcaccactcgtgggattagaggtctg 20693555  T
Q  124 ggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
     |||||||| ||||  || || |||||||| ||||||||||||||||||||||||    
T  20693556 agcttttacagtagaacatacggccctaaaggttgcatcaaacaaagtggccaaa 20693610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 3715042 - 3714953
Alignment:
Q  150 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||||||||  ||||||||| |||  |||||||||||| | |||||| ||| | |||||||||||||| ||| |||||||||||||||||    
T  3715042 taaaagttgtgtcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgtttttatatcatctgtttttgacacttttg 3714953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 29338189 - 29338247
Alignment:
Q  255 gttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 313  Q
    ||||||||||||||||||| ||||||||| ||||| |||||  ||||||||||||||||    
T  29338189 gttcaaagggtcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttac 29338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 28626062 - 28625968
Alignment:
Q  144 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgttttt-ataccatttgtttttgacacttt 237  Q
    ||||||| |||| ||| ||||  || ||||| ||||| |||||| | |||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  28626062 cagcccttaaagctgcgtcaagtaaggtggctaaacacgagaaaacgtgttctgacaatcaacattttttttataccatttgttttttacacttt 28625968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 28625930 - 28625863
Alignment:
Q  252 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||||| ||||||||| |||| ||||||| |||  |||||| ||||||||||||||||| |||||    
T  28625930 aaagttcaaaaggtcatgcataaca-tgtcatatctcataggtctatgaatgttgtgtttacggagatt 28625863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 6225191 - 6225108
Alignment:
Q  156 ttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||| ||||| ||||||| |||||||||||||   |||| ||||| |||||||| || |||  ||||||| |||||||||||||    
T  6225191 ttgcgtcaaataaagtggtcaaacatgagaaattttgttgtgacaatcaacatgcttatatgtcatttgtgtttgacacttttg 6225108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 28009096 - 28009155
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttac 313  Q
    ||||||||||||||| |||||||||||||| ||||| |||||  |||| ||||| |||||    
T  28009096 agttcaaagggtcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttac 28009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 7200540 - 7200607
Alignment:
Q  171 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 240  Q
    ||||||||||||||||| |  ||||  ||| |||||||||||||||  ||||||| ||||||||||||||    
T  7200540 tggccaaacatgagaaatcgagttcaaacaatcaacatgtttttat--catttgtgtttgacacttttgg 7200607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 3137362 - 3137422
Alignment:
Q  260 aagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||||||| | |||||||||  |||| |||||  |||||||||||||||||| ||||    
T  3137362 aagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 3137422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 13398113 - 13398237
Alignment:
Q  99 caccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctga 198  Q
    ||||| || ||||||||| ||||| | ||||||||||||   |||||   ||| |||||| |||||  |||  || |||| |||| ||||||||||| ||    
T  13398113 caccattcctgggattagcggttgagacttttacggtagaatagacaattctacaagttgtatcaagtaaaacggtcaaatatgaaaaagcatgttccga 13398212  T
Q  199 cagtcaacatgtttttataccattt 223  Q
    || ||||||| ||||||||| ||||    
T  13398213 caatcaacatatttttatactattt 13398237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 34644745 - 34644595
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| |||||||| ||||||||||||||||| ||  || ||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  34644745 tttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagcgtgttc 34644646  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||  | ||||| ||||||||||||||||||||||||||| || |||||    
T  34644645 tgacaacctacatgcttttataccatttgtttttgacactttcggcttcct 34644595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 19035643 - 19035476
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    ||||||||||||  | ||||||||| |  |||||||||| || ||  ||||||| ||||||||| |||||||||||| ||| |||| |||||||||||||    
T  19035643 tgtagacttgactgggatttcaccagttgtgggattaggtgtcggaccttttaccgtagggcaggcagccctaaaagctgcgtcaagcaaagtggccaaa 19035544  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||  |||||||||||  ||||||||    
T  19035543 catgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggtttcct 19035476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 28040978 - 28041205
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || | |||||||||||||||||||| ||||||| | ||||| ||  | | ||||||||||||  |  |||||| |||  ||||||||||     
T  28040978 atcaacactcaggcctgcagatgttatggtgtacagatgggtaggtggaaaacatgcttgtgtagacttgactggggtttcactacttgtgggattaggt 28041077  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||  ||||||| |||||  || |||| ||||||   || ||||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||    
T  28041078 gtcggaccttttaccgtaggataggcagctctaaaatccgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttatac 28041177  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||||||| ||||||||    
T  28041178 catttgcttttgacactttcggtttcct 28041205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 29169645 - 29169871
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || | ||| |||||||||||||||  || |||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||||||||||     
T  29169645 atcaacactcaggcctgcggatgttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactt-tgggattaggt 29169743  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||| ||||||| ||||| ||||||||||| |||||||  ||||  || ||||||||||| |||||| | |||||||||| |||||||| ||||||||    
T  29169744 gtcgggccttttaccgtaggacagacagcccttaaagttgtgtcaagtaaggtggccaaacacgagaaaacgtgttctgacaatcaacatgcttttatac 29169843  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||||||| ||||||||    
T  29169844 catttgcttttgacactttcggtttcct 29169871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 50161288 - 50161478
Alignment:
Q  40 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 138  Q
    ||||||||||||||   |||||||||| ||| ||  ||| ||| ||||| |||  ||||||||||||| ||| |||||||| || | |||||||||||||    
T  50161288 atgttatggtgtacggttgggtaagagaaaaacatgcatgtgtggacttaaccgatatttcaccactcgtggaattaggggctgagacttttacggtagg 50161387  T
Q  139 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 229  Q
     |||||| ||||||||||||| |||| |||||||| ||||||||||||||| |||||| ||| |||||||| ||||||| ||||| |||||    
T  50161388 acagacaaccctaaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttctcacaatcaacatgcttttatatcattttttttt 50161478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 25375751 - 25375911
Alignment:
Q  86 ttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgaga 185  Q
    ||||||||  |||||| |||| | |||||||||||  | |||||||||||||| |||||| | | ||||||||| |||| ||||||| |||||||||| |    
T  25375751 ttgaccagggtttcactactcgtcggattaggggtcagagcttttacggtaggacagacaactccaaaagttgcgtcaagcaaagtgaccaaacatgaca 25375850  T
Q  186 aagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    || |||||||| ||  ||||||||||||||||||||||| | ||||||||||||| |||||    
T  25375851 aaacatgttcttaccatcaacatgtttttataccatttgctattgacacttttggcttcct 25375911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 45659498 - 45659726
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || |||||| ||||||| ||||||| ||||||| ||||||| ||  |||  |||||||||||  |  ||||||||||  ||||||||||     
T  45659498 atcaacactcaggcatgcacatgttatagtgtacagatgggtaggaggaaaacatgcatgcgtagacttgactggggtttcaccacttgtgggattaggt 45659597  T
Q  119 gttggggcttttacggtagggcagacagccct-aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttata 217  Q
     | ||| ||||||| ||||| ||  ||||||| ||||| ||| ||||  || ||||||||||| |||||||| |||||||||| |||||||| |||||||    
T  45659598 atcgggccttttaccgtaggacatgcagcccttaaaagctgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttata 45659697  T
Q  218 ccatttgtttttgacacttttggtttcct 246  Q
    ||||||| |||||||||||| | ||||||    
T  45659698 ccatttgcttttgacactttcgatttcct 45659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 42920039 - 42919890
Alignment:
Q  95 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 194  Q
    ||||||| |||| |||||||| |||| || ||||||| | |||| || ||| |||||||||||||||||||||||| |||||||||||||||| | ||||    
T  42920039 atttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgtt 42919941  T
Q  195 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 245  Q
    || ||| |||||||||||||||  ||| || |||||||||||||| |||||    
T  42919940 ctcacaatcaacatgtttttatgtcatctgcttttgacacttttgatttcc 42919890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 31737281 - 31737392
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    ||||||||||| |  | || ||||||||||  || |||| |||||||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||    
T  31737281 cttttacggtaagataaacggccctaaaagcggcgtcaagcaaagtggccaaacatgagaaaacatattctgacaatcaacatgcttttataccatttgt 31737380  T
Q  226 ttttgacacttt 237  Q
    ||||||||||||    
T  31737381 ttttgacacttt 31737392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 2764658 - 2764517
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| ||||||||||| ||||||| ||||||  || ||| |||||||||||  ||| ||||||||| ||||||||||||| | |||||    
T  2764658 tttcaccacttgtgggtttaggggttggtgcttttatggtaggataggcagtcctaaaagttgtgtcagacaaagtggtcaaacatgagaaaacgtgttc 2764559  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
     |||| |||||||| |||||| ||||||  ||||||||||||    
T  2764558 cgacaatcaacatgcttttatgccattttcttttgacacttt 2764517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 37200217 - 37200011
Alignment:
Q  40 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 138  Q
    ||||||||| |||| |||||||||||||||| ||  ||| ||| ||||||||   | ||||||||||| |||||||| ||   || ||||||||  ||||    
T  37200217 atgttatggggtaccaatgggtaagaggaaaacatgcatgtgt-gacttgactgatgtttcaccactcgtgggattaaggaccggagcttttacaatagg 37200119  T
Q  139 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 238  Q
     ||  ||||| |||||||| | ||||  ||||||| ||||||| ||||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||    
T  37200118 acatgcagccataaaagttacgtcaagtaaagtggtcaaacataagaaagcatgtgctaacaatcaatatgtttttataccatttgttttt-acactttt 37200020  T
Q  239 ggtttcctt 247  Q
    || ||||||    
T  37200019 ggcttcctt 37200011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 21473107 - 21473042
Alignment:
Q  171 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactt 236  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||    
T  21473107 tggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactt 21473042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 20259774 - 20259873
Alignment:
Q  145 agccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 244  Q
    ||||||||||| | | |||| ||||||||  ||| |||||||||| |||||||||| |||||||||||||||||||||| || |||||||||| ||||||    
T  20259774 agccctaaaagctacgtcaagcaaagtggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttc 20259873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 4861857 - 4862067
Alignment:
Q  37 cagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggt 135  Q
    |||||||||||||||||  ||||||| ||| ||| ||  ||| ||| || |||||  || ||||||||||  | |||||||||||   | | |||| |||    
T  4861857 cagatgttatggtgtacggatgggtaggagaaaaacatgcatgtgtggatttgactggtgtttcaccacttgttggattaggggtcttgacatttatggt 4861956  T
Q  136 agggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacact 235  Q
    ||| ||||||||| |||||||||| ||||  ||| ||| ||||||||||||||| | ||||||||  ||||||  |||||||| ||||| ||||||||||    
T  4861957 aggacagacagccttaaaagttgcgtcaagtaaaatggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacact 4862056  T
Q  236 tttggtttcct 246  Q
    || | ||||||    
T  4862057 ttcgatttcct 4862067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 22347022 - 22346924
Alignment:
Q  148 cctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||   |||| ||||||||||||| |||||||||| |||||||||| ||||||||  |||||||| |||| |||||||||||| ||||||||    
T  22347022 cctaaaagttatgtcaagcaaagtggccaaatatgagaaagcgtgttctgacaatcaacatgcgtttataccttttgcttttgacactttcggtttcct 22346924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 16500187 - 16500070
Alignment:
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
    ||||||||||||||||| ||||||  |||||||||||| |||   |||||||||||| || ||||| |||||||| ||| | ||||||  ||||||| ||    
T  16500187 ggggcttttacggtaggacagacaatcctaaaagttgcgtcacgtaaagtggccaaatataagaaaacatgttctaacaattaacatgcctttatactat 16500088  T
Q  222 ttgtttttgacacttttg 239  Q
    ||| ||||||||||||||    
T  16500087 ttgcttttgacacttttg 16500070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 2898833 - 2898731
Alignment:
Q  147 ccctaaaagttgcatcaaacaaagtggccaaacatgagaa----agcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 242  Q
    ||||||||| |||||||| |||||||||||||||||||||    ||| |||||||||| |||| | |||||||||||||||| |||||| ||||| ||||    
T  2898833 ccctaaaagatgcatcaagcaaagtggccaaacatgagaaagtgagcgtgttctgacaatcaata-gtttttataccatttgcttttgatactttcggtt 2898735  T
Q  243 tcct 246  Q
    ||||    
T  2898734 tcct 2898731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 36487011 - 36486918
Alignment:
Q  150 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    ||||| |||||||||  ||||||| |||| |||||||||| |||| ||||| |||| || ||||||||  ||||| ||||||||||||||||||    
T  36487011 taaaaattgcatcaagtaaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttatataatttgcttttgacacttttggttt 36486918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 38731607 - 38731546
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 315  Q
    ||||||||||||||||||||| |||||||| ||||| |||||  ||||| ||||||||||||    
T  38731607 agttcaaagggtcatgcacaataatgtcatgactcctaggtccatgaatattgtgtttacga 38731546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 23044005 - 23043929
Alignment:
Q  147 ccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 223  Q
    |||| |||| |||||||| ||||||||||||| |||||||| || || || ||| |||||||| |||||||||||||    
T  23044005 ccctcaaagctgcatcaagcaaagtggccaaatatgagaaaacaagtactcacaatcaacatgcttttataccattt 23043929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 37932146 - 37932264
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  ||||||||||||    ||||||||| ||| | |||||||||||||||||||  |||| |||| ||| |||| | |||||||  |||||    
T  37932146 tttcaccacttgtgggattaggggccaaggcttttacagtaagacagacagccctaaaagttgtgtcaagcaaaatggtcaaatacgagaaag-gtgttc 37932244  T
Q  196 tgacagtcaacatgttttta 215  Q
    ||||| ||||| ||||||||    
T  37932245 tgacaatcaacgtgttttta 37932264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 24177540 - 24177589
Alignment:
Q  197 gacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  24177540 gacaatcaacatatttttataccatttgtttttgacagtttcggtttcct 24177589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 50314613 - 50314694
Alignment:
Q  157 tgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 238  Q
    ||||| || |||||||| ||||||||| ||| | |||||| ||| |||||||| |||||||||||||  |||||||| ||||    
T  50314613 tgcataaagcaaagtggtcaaacatgacaaaacttgttctcacaatcaacatgcttttataccatttacttttgacattttt 50314694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 35387643 - 35387710
Alignment:
Q  151 aaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    |||| ||||||||| |||||||||||||||||| ||||  |||||||||  |||||| | ||||||||    
T  35387643 aaaatttgcatcaagcaaagtggccaaacatgaaaaagtgtgttctgacgatcaacaagcttttatac 35387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 7213341 - 7213279
Alignment:
Q  185 aaagcatgttctgacagtcaacatgttttt-ataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||||||| | | ||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  7213341 aaagcatgttctgataattaacatgttttttatatcatttatttttgacactttcggtttcct 7213279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 19035458 - 19035424
Alignment:
Q  176 aaacatgagaaagcatgttctgacagtcaacatgt 210  Q
    ||||||||||||||||||||||||| |||||||||    
T  19035458 aaacatgagaaagcatgttctgacaatcaacatgt 19035424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 47459753 - 47459711
Alignment:
Q  204 aacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||||||||||||| |||||| |||||||| |||||    
T  47459753 aacatgtttttataccatttgcttttgatacttttggcttcct 47459711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 28517142 - 28517358
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| | |||| ||||||||||||||  ||||||  ||||||| ||   || ||| ||||||||  |  ||||||||||  |||| |||||||| |    
T  28517142 acacttaggcctgcaaatgttatggtgtacggatgggttggaggaaaacatgtatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgg 28517241  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    |||||||||| ||||| |||||| ||||||||| ||| |||| |||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||    
T  28517242 gggcttttacagtaggacagacaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatt 28517341  T
Q  223 tgtttttgacacttttg 239  Q
    || ||||||||||||||    
T  28517342 tgcttttgacacttttg 28517358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 4501495 - 4501296
Alignment:
Q  39 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 137  Q
    |||||||||||||||  || |||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  |||||||||| || ||| ||||||| ||||    
T  4501495 gatgttatggtgtacggataggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtag 4501396  T
Q  138 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    | || ||| ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||  ||||| ||||||||||||    
T  4501395 gacaaacaaccctaaaagctgcgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatataatttgcttttgacacttt 4501296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 43857130 - 43856903
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    |||||||||||| | |||||||||||||||||||  ||||||| ||| ||| ||  |||  || ||||||||  |  ||||||||||  |||||||||||    
T  43857130 atcaacacttaggcctgcagatgttatggtgtacggatgggtaggagaaaaacatacatgcgtggacttgacgggggtttcaccacttgtgggattaggg 43857031  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||||||||||| ||||| |||||| |  |||||| ||| |||| ||||||||| | |||||||||||| |||| ||||| ||||||||  |||||||    
T  43857030 gtcggggcttttacagtaggacagacaacattaaaagatgcgtcaatcaaagtggctagacatgagaaagcgtgttttgacaatcaacatgcgtttatac 43856931  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
     ||||| |||||||| ||||||||||||    
T  43856930 aatttgcttttgacatttttggtttcct 43856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 21326766 - 21326916
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||||||||| || ||  ||||||| ||||| || |||||||||||||  || |||| |||||||||||||||||||||||| |||||    
T  21326766 tttcaccacttgtgggattaggtgtcggaccttttaccgtaggacaaacagccctaaaagccgcgtcaagcaaagtggccaaacatgagaaagcgtgttc 21326865  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| |||||||| |||||||||||||| |||||||||||| | ||||||    
T  21326866 tgacaatcaacatgcttttataccatttgcttttgacactttcgatttcct 21326916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 45613693 - 45613919
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || | ||| ||||||||| ||||| |||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  | ||||||||     
T  45613693 atcaacactcaggcctgcggatgttatgatgtacgaatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtaggattaggt 45613792  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||| ||||| | ||||| |||||| ||||||||||||| ||||  || ||| ||||||| | |||||  |||||||||| |||||||||||||||||    
T  45613793 gtcgggcctttttccgtaggacagacaaccctaaaagttgcgtcaagtaaggtgaccaaacacgggaaagtgtgttctgacaatcaacatgtttttatac 45613892  T
Q  219 catttgtttttgacacttttggtttcc 245  Q
    |||||| |||||||||||| |||||||    
T  45613893 catttgattttgacactttcggtttcc 45613919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 32584768 - 32584630
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    ||||||||||||| |||| |||||||||||| ||  || |||||||| |||||||||||||||||| ||||||||||||| | |||||||||| |||| |    
T  32584768 tgggattaggggtcggggattttacggtaggacatgcaaccctaaaaattgcatcaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaaga 32584669  T
Q  208 tgtttttataccatttgtttttgacacttttggtttcct 246  Q
    || ||||| |||||||| ||||||||||||  |||||||    
T  32584668 tgcttttacaccatttgcttttgacactttatgtttcct 32584630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 983145 - 982981
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    |||||||||||| ||  ||| ||||||  |||||||||| || ||  ||||||  ||||| ||| ||||| |||||| ||| |||| |||||||||||||    
T  983145 tgtagacttgactagggtttaaccacttgtgggattaggtgtgggaccttttattgtaggacaggcagccataaaagctgcgtcaagcaaagtggccaaa 983046  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    ||||||||| | |||||||||| |||||||| |||||||||||||| |||||| ||||| |||||    
T  983045 catgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttt 982981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 5825508 - 5825311
Alignment:
Q  39 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 137  Q
    ||||||||||||||| |||||||  ||||||| ||  ||| ||| ||||||||  |  ||||||||||  |||| |||||||| | ||||||||||| ||    
T  5825508 gatgttatggtgtacgaatgggttggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcgaggcttttacggcag 5825409  T
Q  138 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    | |||  ||||||||||| |||||||| |||||||  ||||||||| || || |||| ||||| ||||||||||||||||||||||  ||||||||||||    
T  5825408 gacaggaagccctaaaagctgcatcaagcaaagtg--caaacatgacaatgcgtgttatgacaatcaacatgtttttataccatttacttttgacacttt 5825311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 246
Target Start/End: Complemental strand, 19277434 - 19277322
Alignment:
Q  134 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 233  Q
    ||||| ||| ||| |||||||| ||| |||| |||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  19277434 gtaggacaggcagtcctaaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgaca 19277335  T
Q  234 cttttggtttcct 246  Q
    |||| ||||||||    
T  19277334 ctttcggtttcct 19277322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 27521651 - 27521500
Alignment:
Q  95 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 194  Q
    ||||||||| |  |||||||||| || ||| ||||||||||||| ||  || || |||||||||| | ||||||||||| ||||||||||||| | ||||    
T  27521651 atttcaccatttgtgggattaggtgtcgggccttttacggtaggacatgcacccttaaaagttgcgttaaacaaagtggtcaaacatgagaaaacgtgtt 27521552  T
Q  195 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||| ||||||||  ||||||| ||||  |||||||||||||||||||||    
T  27521551 ctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcct 27521500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 2904544 - 2904394
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  || | ||||||| || ||| |||||||||||  |||||| |||||||||| | |||| |||| | | |||||||||||||||||||||    
T  2904544 tttcaccacttgtgaggttaggggatgaggcatttacggtaggatagacagtcctaaaagttacgtcaagcaaaatagtcaaacatgagaaagcatgttc 2904445  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
     |||| |||||||| ||||||| ||||||||| |||||  ||||| |||||    
T  2904444 cgacaatcaacatgattttatatcatttgtttgtgacatgtttggcttcct 2904394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 3676836 - 3676675
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagac-agccctaaaagttgcatcaaacaaagtggccaa 177  Q
    ||||||||||||  |  ||||||||||  |||||||||| || ||  ||||||| ||||| ||| | ||||||||||| ||| |||| |||||||| |||    
T  3676836 tgtagacttgactggggtttcaccacttgtgggattaggtgtcggtccttttaccgtaggacaggccagccctaaaagctgcgtcaagcaaagtggtcaa 3676737  T
Q  178 acatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||| ||||||| |||||| ||  |||| ||| |||||||||||||| ||||||||||||||    
T  3676736 acatcagaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttg 3676675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 30216040 - 30216136
Alignment:
Q  150 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||| ||| |||| |||| ||| |||| |||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  30216040 taaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttataccatttgcttttgacactttcggtttcct 30216136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 246
Target Start/End: Complemental strand, 22198150 - 22198015
Alignment:
Q  111 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 210  Q
    ||||||| || ||| |||||| |||||| |   ||||||||||||  || |||| ||||||| |||||||||||||||  |||||  ||| |||||||||    
T  22198150 gattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgt 22198051  T
Q  211 ttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  22198050 ttttataccatttgcttttgtcactttcggtttcct 22198015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 22239671 - 22239806
Alignment:
Q  111 gattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgt 210  Q
    ||||||| || ||| |||||| |||||| |   ||||||||||||  || |||| ||||||| |||||||||||||||  |||||  ||| |||||||||    
T  22239671 gattaggtgtcgggccttttatggtaggacgcgcagccctaaaagcggcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgt 22239770  T
Q  211 ttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||||||| ||||| |||||| ||||||||    
T  22239771 ttttataccatttgcttttgtcactttcggtttcct 22239806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 24527756 - 24527618
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    |||||||||| || ||  ||||||| ||||| ||| ||||||||||||  |  ||||  |||||||  |||||||||||| | |||||||||| ||||||    
T  24527756 tgggattaggtgtcggaccttttaccgtaggacaggcagccctaaaagcagtgtcaagtaaagtgggaaaacatgagaaaacgtgttctgacaatcaaca 24527657  T
Q  208 tgtttttataccatttgtttttgacacttttggtttcct 246  Q
    || |||||||||||||| ||||||||||||  |||||||    
T  24527656 tgcttttataccatttgcttttgacactttcagtttcct 24527618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 42295177 - 42295262
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||| |||| ||||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  42295177 tcaagcaaaatggccaaacataagaaagcttcttctgacaatcaacatgtttttataccatttgttttttatactttcggtttcct 42295262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 10905246 - 10905151
Alignment:
Q  146 gccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 242  Q
    |||||||||| ||| |||| ||||||||||||| ||||||||   |||||||||| ||||||||  ||||||||||||| |||||||||||||||||    
T  10905246 gccctaaaagctgcgtcaagcaaagtggccaaatatgagaaaaagtgttctgacactcaacatg-ctttataccatttgcttttgacacttttggtt 10905151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 40726478 - 40726549
Alignment:
Q  166 caaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    |||||||||||||||| | |||   |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40726478 caaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacacttt 40726549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 9281066 - 9281201
Alignment:
Q  102 cactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacag 201  Q
    ||||| |||||||| | | | ||| |||||| ||||| |||||| ||||||||| |||||||| |||| | || |||||||||||||| |||||| |||     
T  9281066 cactcgtgggattatgtgatagggtttttacagtaggacagacaaccctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaa 9281164  T
Q  202 tcaacatgtttttataccatttgtttttgacactttt 238  Q
    |||||||| |||||||| |||||  ||||||| ||||    
T  9281165 tcaacatgcttttatactatttggatttgacattttt 9281201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 9292037 - 9292172
Alignment:
Q  102 cactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacag 201  Q
    ||||| |||||||| | | | ||| |||||| ||||| |||||| ||||||||| |||||||| |||| | || |||||||||||||| |||||| |||     
T  9292037 cactcgtgggattatgtgatagggtttttacagtaggacagacaaccctaaaagctgcatcaagcaaactagc-aaacatgagaaagcgtgttctaacaa 9292135  T
Q  202 tcaacatgtttttataccatttgtttttgacactttt 238  Q
    |||||||| |||||||| |||||  ||||||| ||||    
T  9292136 tcaacatgcttttatactatttggatttgacattttt 9292172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 33202405 - 33202493
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttct 196  Q
    ||||||||||||||||||||||||| |||||  ||| ||||||  ||||||| || ||| ||||||||||||||||||| || ||||||    
T  33202405 tgggattaggggttggggcttttacagtaggatagaaagccctggaagttgcgtccaactaagtggccaaacatgagaacgcgtgttct 33202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 34067820 - 34067939
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    ||||||| || || |||||||||||  |||| || |||| | ||||| |||||||||||||||  |||| ||||| ||||||| ||| ||| ||||||||    
T  34067820 cttttactgtgggacagacagccctcgaagtcgcttcaagccaagtgaccaaacatgagaaagtgtgttttgacaatcaacat-tttctatgccatttgt 34067918  T
Q  226 ttttgacacttttggtttcct 246  Q
     ||||||||||||||||||||    
T  34067919 atttgacacttttggtttcct 34067939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 43856872 - 43856811
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 315  Q
    |||||||||||||||||||||||||||||| ||||| |||||  |||||||| |||||||||    
T  43856872 agttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacga 43856811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 25186876 - 25186999
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    |||||||||| || ||  ||||||| ||||| || | | ||||||||||||  ||||  ||||||| | ||||||||||||| ||||| || | ||||||    
T  25186876 tgggattaggtgtcggaccttttaccgtaggacataaaaccctaaaagttgtgtcaagtaaagtggtctaacatgagaaagcgtgttccgataatcaaca 25186975  T
Q  208 tgtttttataccatttgtttttga 231  Q
    ||||||| ||||||||| ||||||    
T  25186976 tgtttttctaccatttgcttttga 25186999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 34772946 - 34772819
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    |||||||| | ||||||  |||||||||| |  || |||| ||||||||||  |||| |||||| |||||| |||||||||  ||||| |||| | || |    
T  34772946 tgggattatgtgttgggctttttacggtatgataggcagctctaaaagttg--tcaatcaaagtagccaaatatgagaaagtgtgttcggacaattaata 34772849  T
Q  208 tgtttttataccatttgtttttgacacttt 237  Q
    ||||||||||||||||| |||||| |||||    
T  34772848 tgtttttataccatttgcttttgaaacttt 34772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 1249735 - 1249667
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 194  Q
    |||||||||||||  ||||||||||||||  ||| ||||| ||||||| ||||||||||||||| ||||    
T  1249735 cttttacggtaggatagacagccctaaaacctgcgtcaaataaagtggtcaaacatgagaaagcgtgtt 1249667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 38839564 - 38839360
Alignment:
Q  38 agatgttatggtgtacaaatgggtaagaggaaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 137  Q
    ||||||||||||||||  ||| ||||||| |||||  ||| ||| ||||||||    |||||| || |  ||||||| ||||| | | ||||||||| ||    
T  38839564 agatgttatggtgtacggatgtgtaagagaaaacatgcatgtgtggacttgactgagatttcatcattg-tgggatttggggtcgtgtcttttacggaag 38839466  T
Q  138 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaa----catgtttttataccatttgtttttgaca 233  Q
      |||||| | ||||||||||| | ||| ||| | | |||||||||||||||||||| || || ||||    ||||||||||||  ||||| ||||||||    
T  38839465 aacagacaactctaaaagttgcgtaaaataaaatcgtcaaacatgagaaagcatgttatgtcaatcaacatgcatgtttttatataatttgcttttgaca 38839366  T
Q  234 cttttg 239  Q
    ||||||    
T  38839365 cttttg 38839360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 30216165 - 30216228
Alignment:
Q  252 aaagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacga 315  Q
    |||||||||| ||||||||| | |||||||||| |||| |||||| ||||||||||||| ||||    
T  30216165 aaagttcaaatggtcatgcatagcaatgtcatatctcctaggtctatgaatgttgtgttcacga 30216228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 27521469 - 27521403
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||| ||||||||| |||||||||||  |||| | |||| |||||||||||||||||| ||||    
T  27521469 agttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggatt 27521403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 43383283 - 43383211
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 233  Q
    ||||| ||||||||||| |||||||||||||||||   || |||||||| |||||| |||||| | |||||||    
T  43383283 tcaaataaagtggccaaccatgagaaagcatgttccagcaatcaacatgcttttatgccatttatgtttgaca 43383211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 48539261 - 48539213
Alignment:
Q  195 ctgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    |||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  48539261 ctgacaatcaacatgcttttataccatttgcttttgacactttcggttt 48539213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 45613951 - 45614017
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||| | ||||||| |||||||||| | |||| |||||  |||||||||||||||||| ||||    
T  45613951 agttcaaaagttcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggatt 45614017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 79 - 244
Target Start/End: Complemental strand, 44198963 - 44198798
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    ||||||||||||  |  ||||||||||  |||||||||| || ||  ||||||| ||||| ||| |||| ||||||||||| |||| |||||||||||||    
T  44198963 tgtagacttgactggggtttcaccacttgtgggattaggtgtcggaccttttaccgtaggtcaggcagctctaaaagttgcgtcaagcaaagtggccaaa 44198864  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttc 244  Q
    ||||||||||| |||||||| | |||||||| |||||||||||||| |||||||||||| ||||||    
T  44198863 catgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactttcggtttc 44198798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 53785965 - 53785738
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || ||||| |||||| ||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  ||||||||||  ||||||||||     
T  53785965 atcaacactcaggcatgcggatgttttggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcaccactagtgggattaggt 53785866  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||| ||||||| |||||  || ||||||| ||||  || ||||  || ||||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  53785865 gtcgggccttttaccgtaggataggcagcccttaaagccgcgtcaagtaaggtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttatac 53785766  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||||||| ||||||||    
T  53785765 catttgcttttgacactttcggtttcct 53785738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 46940705 - 46940841
Alignment:
Q  103 actcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagt 202  Q
    |||| ||||||||||||| | || ||||| |||||| |||||| | ||||||| ||| |||| |||||||||||||||| ||||| ||||||| |||| |    
T  46940705 actcgtgggattaggggtcgaggattttatggtaggacagacaactctaaaagatgcgtcaagcaaagtggccaaacattagaaaacatgttccgacaat 46940804  T
Q  203 caacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||||| |||||||||||||||||||||||||||||    
T  46940805 caacatgcttttataccatttgtttttgacacttttg 46940841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 7901094 - 7900887
Alignment:
Q  40 atgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagg 138  Q
    ||||||||||||| | ||| ||| ||||||| ||  ||| ||| ||||||||  |  ||||||||||  ||||||||||||||||| |||||||||||||    
T  7901094 atgttatggtgtatagatgtgtaggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggattaggggttgggtcttttacggtagg 7900995  T
Q  139 gcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacactttt 238  Q
     | || | ||||||||  ||| |||| |||| | ||| ||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||||||     
T  7900994 acggatatccctaaaaactgcgtcaagcaaaatagccgaacatgagaaagcgttttctgacaatcaacatgcttttataccatttgtttttgacactttc 7900895  T
Q  239 ggtttcct 246  Q
    || |||||    
T  7900894 ggcttcct 7900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 39583084 - 39583307
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| ||||| |||||||| ||||||  ||||||| ||||||| ||  |||  || ||||||||     ||| ||||||  |||||||| |||| |    
T  39583084 acacttaggcatgcggatgttatagtgtacggatgggtaggaggaaaacatgcatgcgtggacttgacttaggttttaccacttgtgggattaagggtcg 39583183  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatt 222  Q
    || | |||| ||||||  || |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||    
T  39583184 ggccatttatggtaggataggcagccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatatcatt 39583283  T
Q  223 tgtttttgacacttttggtttcct 246  Q
    |||||| |||||||| ||||||||    
T  39583284 tgttttcgacactttcggtttcct 39583307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 49018216 - 49017992
Alignment:
Q  23 aacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggtt 121  Q
    |||||| || |||||||||||||||||||||  || |||| ||||||| ||  ||| |||| |||||||  |  ||||||||||  ||| |||||| ||     
T  49018216 aacactcaggcatgcagatgttatggtgtacggattggtacgaggaaaacatgcatgtgtaaacttgactggagtttcaccacttgtggaattaggtgtc 49018117  T
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
    | | ||||||||||||| ||  || |||| |||||| | | |||||||||| |||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  49018116 gagccttttacggtaggacaagcaaccctgaaagttacgtaaaacaaagtgaccaaacatgagaaagtgtgttctaacaatcaacatgtttttataccat 49018017  T
Q  222 ttgtttttgacacttttggtttcct 246  Q
    || ||||| ||||||| ||||||||    
T  49018016 tttttttttacactttcggtttcct 49017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 37132971 - 37133075
Alignment:
Q  140 cagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||||||||||||||| | | |||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |    
T  37132971 cagacagccctaaaagctacgtcaagcaaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcg 37133070  T
Q  240 gtttc 244  Q
    |||||    
T  37133071 gtttc 37133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 52741439 - 52741590
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaa-gttgcatcaaacaaagtggccaaacatgagaaagcatgtt 194  Q
    ||||||||||  |||||||||  || ||  ||||||  ||||| ||| ||||||||||| | ||  ||||||||| || |||||||||||||||| ||||    
T  52741439 tttcaccacttgtgggattagatgtaggaccttttattgtaggacaggcagccctaaaaagctgagtcaaacaaattgaccaaacatgagaaagcgtgtt 52741538  T
Q  195 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  52741539 ctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcct 52741590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 26772911 - 26772787
Alignment:
Q  122 ggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccat 221  Q
    ||||| ||||| ||||| ||  || ||||||||||||  |||| |||||||||||||||| ||||| | |||||||||| |||||||| |||||||||||    
T  26772911 ggggcatttacagtaggacatgcatccctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccat 26772812  T
Q  222 ttgtttttgacacttttggtttcct 246  Q
    ||| ||||||||||||||| |||||    
T  26772811 ttgcttttgacacttttggcttcct 26772787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 4473224 - 4473090
Alignment:
Q  112 attaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtt 211  Q
    ||||| |||||||| |||||||||||| |||| |||| ||||| |||| |||| ||||||| | |||||||| ||||| |||||| ||  |||| |||||    
T  4473224 attagtggttggggtttttacggtaggacagagagccttaaaaattgcgtcaagcaaagtgtcaaaacatgaaaaagcgtgttctaaccatcaatatgtt 4473125  T
Q  212 tttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||| |||||||||||||||||| || |||||    
T  4473124 tttatactatttgtttttgacactttcggcttcct 4473090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 13582705 - 13582539
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    |||||||||||||    ||||| ||||  |||||||||| ||  || ||||||| ||||| ||  |||||||||||| ||| |||| |||||||  ||||    
T  13582705 tgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaagcagccctaaaagctgcgtcaatcaaagtgatcaaa 13582606  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||| ||||||  |||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||    
T  13582605 cataagaaagtgtgttctgacaatcaacgtgtttttataccatttgttttt-acacttttgatttcct 13582539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 37992511 - 37992384
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||| |||||||| |||||| ||| | |  |||||||||||| || | ||||||  ||||||  |||||||||||| ||||||||||| ||||||||||    
T  37992511 tttcatcactcatgagattagaggtcgagatttttacggtaggacatatagccctgcaagttgtgtcaaacaaagtgaccaaacatgaggaagcatgttc 37992412  T
Q  196 tgacagtcaacatgtttttataccattt 223  Q
    ||||| |||||||| ||||||| |||||    
T  37992411 tgacaatcaacatgattttatatcattt 37992384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 5338796 - 5338672
Alignment:
Q  125 gcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt---ctgacagtcaacatgtttttataccat 221  Q
    |||||||||||||| |||| |||||||| |||||| ||||||||| | ||||||||||||||||   |||    |||||||||||||| |||||||| ||    
T  5338796 gcttttacggtaggacagaaagccctaagagttgcgtcaaacaaaattgccaaacatgagaaagtgcgttgcgttgacagtcaacatgcttttatacaat 5338697  T
Q  222 ttgtttttgacacttttggtttcct 246  Q
    ||| |||||||||||| || |||||    
T  5338696 ttgcttttgacactttcggcttcct 5338672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 38670887 - 38670952
Alignment:
Q  175 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttgg 240  Q
    ||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  38670887 caaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttgg 38670952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 38146223 - 38146092
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    ||||||||||||| || ||||| | |||||| ||  ||||||||||||  ||||||| |||||||| |||||  |||| | | |||| ||||| ||||||    
T  38146223 tgggattaggggtcggagctttgagggtaggacatgcagccctaaaagcggcatcaatcaaagtggtcaaacgcgagacaacgtgttttgacaatcaaca 38146124  T
Q  208 tgtttttataccatttgtttttgacacttttg 239  Q
    ||||||||||||||||   |||||||||||||    
T  38146123 tgtttttataccatttacatttgacacttttg 38146092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 32546901 - 32546824
Alignment:
Q  169 agtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||||||||||||| ||||| |||| |||||||  |||||||||||||| ||||||||||||  |||||||    
T  32546901 agtggccaaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactttcagtttcct 32546824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 3443270 - 3443390
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    |||||||| |||| |||| || |||||||||||| |||| |||| ||||||||||||| ||||  | |||| ||| |||||||| |||||||||||||      
T  3443270 cttttacgataggacagagagtcctaaaagttgcgtcaagcaaaatggccaaacatgaaaaagtgtattctaacaatcaacatgcttttataccattttc 3443369  T
Q  226 ttttgacacttttggtttcct 246  Q
    | ||||||||||  |||||||    
T  3443370 tgttgacactttcagtttcct 3443390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 38978757 - 38978877
Alignment:
Q  126 cttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgt 225  Q
    |||||||||||||  | ||| ||||||||||||  |||| |||| |||  | ||||| |||| | | || ||||| |||| |||||||||||| ||||||    
T  38978757 cttttacggtaggaaatacaaccctaaaagttgtgtcaagcaaattggttagacatgtgaaaacgtattttgacaatcaatatgtttttatactatttgt 38978856  T
Q  226 ttttgacacttttggtttcct 246  Q
    |||||||||||||||||||||    
T  38978857 ttttgacacttttggtttcct 38978877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 7502010 - 7502090
Alignment:
Q  167 aaagtggccaaacatgagaaagcatgttctgacagtcaacatg-tttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||| ||||||||||||||| |||||  ||| |||||||| ||||||||||||||  |||||||| ||||||||||||    
T  7502010 aaagtggtcaaacatgagaaagcgtgttcgaacaatcaacatgttttttataccattttcttttgacatttttggtttcct 7502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 54508367 - 54508455
Alignment:
Q  152 aaagttgcatcaaacaaagtggccaaacatgagaaag-catgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||||||| ||||||||| |||| ||||||||||||  | |||||||||| | |||||||||||||| |||||| |||||||| |||||    
T  54508367 aaagttgcgtcaaacaaaatggctaaacatgagaaaaacttgttctgacaattaacatgtttttatatcatttgcttttgacatttttg 54508455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 51234716 - 51234654
Alignment:
Q  175 caaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||||||| |||||||||| |||||  ||||||| ||||||||||||| |||||||||||||    
T  51234716 caaacatgaaaaagcatgttatgacaaccaacatgcttttataccatttatttttgacacttt 51234654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 43123268 - 43123197
Alignment:
Q  152 aaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccattt 223  Q
    ||||| ||||||| ||||||| | |||||||| |||| ||||||||||| |||||||||| |||||| ||||    
T  43123268 aaagtcgcatcaagcaaagtgtctaaacatgataaaggatgttctgacaatcaacatgttgttatactattt 43123197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 13582508 - 13582442
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||| ||||||||| |||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  13582508 agttcaaaaggtcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagatt 13582442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 38146054 - 38145988
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||||||||||||| |||||||||||  |||| |||||  |||| ||||||||||||| ||||    
T  38146054 agttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgatt 38145988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 52411903 - 52411960
Alignment:
Q  180 atgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    |||||| ||| |||||||||| |||||||| |||||| ||||||| ||||||||||||    
T  52411903 atgagagagcgtgttctgacaatcaacatgcttttattccatttgcttttgacacttt 52411960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 7502109 - 7502153
Alignment:
Q  244 ccttctacaaagttcaaagggtcatgcacaacaatgtcataactc 288  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  7502109 ccttctacagagtttaaagggtcatgcacaacaatgtcatgactc 7502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 46320025 - 46320093
Alignment:
Q  253 aagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagattt 321  Q
    |||||||||||||||  |||||| ||||||| ||| | |||||  ||||||| ||||||||||||||||    
T  46320025 aagttcaaagggtcacacacaacgatgtcatgacttctaggtccatgaatgtcgtgtttacgaagattt 46320093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 29862049 - 29862003
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa 70  Q
    |||||||| |||||||||||||||||||||  ||||||| |||||||    
T  29862049 acacttaggcatgcagatgttatggtgtacggatgggtaggaggaaa 29862003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 46940882 - 46940944
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaa 316  Q
    |||||||||| |||||||| |||||||||| ||||  ||||   |||||||||||||||||||    
T  46940882 agttcaaaggatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaa 46940944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 35484691 - 35484763
Alignment:
Q  167 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||||| |||||||||||||  ||||||  ||| ||||||||||||| ||| |||||  |||||||| ||||    
T  35484691 aaagtggtcaaacatgagaaaatatgttccaacaatcaacatgtttttgtactatttgcatttgacacgtttg 35484763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 6529 - 6363
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    ||||||||||||  |  ||||||||||  ||||||||||| | ||  ||||||| ||||| |||||||||||||||||||| ||||  ||||||||||||    
T  6529 tgtagacttgactggggtttcaccacttgtgggattaggg-tcggaccttttaccgtaggacagacagccctaaaagttgcgtcaagtaaagtggccaaa 6431  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||| |||||||||| |||||||| || ||||||||||| ||||||||||||  |||||||    
T  6430 catgagaaagcgtgttctgacaatcaacatgcttctataccatttgcttttgacactttcagtttcct 6363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 41867759 - 41867986
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || | ||| |||||||||||||||| ||||||| | ||||| ||  | | ||||||||||||    ||||||| |||  ||||||||||     
T  41867759 atcaacactcaggcctgcggatgttatggtgtacagatgggtaggtggaaaacatgcttgtgtagacttgactgagatttcacgacttgtgggattaggt 41867858  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||  ||||||  ||||| ||| ||||| |||||| ||| |||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  41867859 gtcggaccttttatcgtaggacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttatac 41867958  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||||||| || |||||    
T  41867959 catttgcttttgacactttcgggttcct 41867986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 23484789 - 23485006
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| |  |||||| |||||||| |||||  ||||||| ||||||| ||  ||| |||||||||||   |  ||||||||||  |||||||| |     
T  23484789 atcaacactcaagcatgcatatgttatgatgtacggatgggtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttgtgggattaagt 23484888  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    || ||| |||| ||||| || ||   ||||||||||| | | |||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||    
T  23484889 gtcgggcctttaacggtgggacaactagccctaaaagctacgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttatac 23484988  T
Q  219 catttgtttttgacactt 236  Q
    ||||||||||||||||||    
T  23484989 catttgtttttgacactt 23485006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 2888753 - 2888545
Alignment:
Q  35 tgcagatgttatggtgtacaaatgggtaagagg-aaacactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacg 133  Q
    ||||||||||||||| |||| |||||||||||| |||||  ||| ||| ||||| ||  | ||||| ||||| || ||||||||||| ||     ||| |    
T  2888753 tgcagatgttatggtatacatatgggtaagaggtaaacatgcatgtgtggacttaactggaatttcgccacttataggattaggggtcgga----ttatg 2888658  T
Q  134 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 233  Q
    |||| ||| ||| ||||||||||||| || | |||||||| ||||||||||||| | |||||||||| ||||||||||||||||||||| |||| |||||    
T  2888657 gtagtgcaaacaaccctaaaagttgcgtctagcaaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgaca 2888558  T
Q  234 cttttggtttcct 246  Q
    ||||||| |||||    
T  2888557 cttttggcttcct 2888545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 4412917 - 4413144
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || | ||| |||||||||||||||  ||||||| | ||||| ||  | | ||||||||||||  |  ||||||||||  |||||||| |     
T  4412917 atcaacactcaggcctgcggatgttatggtgtacggatgggtaggtggaaaacatgcttgtgtagacttgactggggtttcaccacttgtgggattaagt 4413016  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    ||  |  ||||||| ||||| ||| || ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||    
T  4413017 gtcagaccttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttatac 4413116  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| |||||||||||| ||||||||    
T  4413117 catttgcttttgacactttcggtttcct 4413144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 5532598 - 5532457
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||  |||||||||||| ||| |||| |||||||| ||||||||||||| | ||||     
T  5532598 tttcaccactcataggattaggggtcggggattttacggtaggacatgcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttg 5532499  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    ||||| |||||||| |||||||| ||||  ||||||||||||    
T  5532498 tgacaatcaacatgcttttatactatttacttttgacacttt 5532457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 19161634 - 19161858
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || ||||| ||||||||| ||||   ||||||| ||||||| ||  ||| |||||||||||  ||  ||||||||||  || ||||||      
T  19161634 atcaacactcaggcatgcggatgttatgatgtaaggatgggtaggaggaaaacatgcatgtgtagacttgaatagggtttcaccacttgtgagattagat 19161733  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    ||  || |||||| |||||| || ||| ||||||||  ||| ||||  ||||||| ||||||||| ||||| |||||||||| |||||||||||||||||    
T  19161734 gtcaggccttttatggtaggacatacatccctaaaatctgcgtcaagaaaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttatac 19161833  T
Q  219 catttgtttttgacacttttggttt 243  Q
    |||||| |||||||||||| |||||    
T  19161834 catttgcttttgacactttcggttt 19161858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 9685326 - 9685486
Alignment:
Q  79 tgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaa 178  Q
    ||||||||||||  |  ||||||||||  |||||||||| ||  |  ||||||| |||||  || |||||||||||   || |||| |||||||||||||    
T  9685326 tgtagacttgactggggtttcaccacttgtgggattaggtgtcagaccttttaccgtaggataggcagccctaaaatccgcgtcaagcaaagtggccaaa 9685425  T
Q  179 catgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    ||||| ||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  9685426 catgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttg 9685486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 28225167 - 28225029
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    |||| ||||| ||| |||||||||||||||| || ||| |  |||||| ||| |||| ||||||| ||||| |||||||||| | |||||||| ||||||    
T  28225167 tgggcttaggagttagggcttttacggtaggacaaacaactttaaaagctgcgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaaca 28225068  T
Q  208 tgtttttataccatttgtttttgacacttttggtttcct 246  Q
    || |||||||||||||| |||||||||||| || |||||    
T  28225067 tgcttttataccatttgcttttgacactttcggcttcct 28225029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 246
Target Start/End: Complemental strand, 17344894 - 17344667
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||| || ||||| |||||||||||||||  ||||||| ||||||| ||  ||| ||||||||||||  |  |||||| |||  ||||||||||     
T  17344894 atcaacactcaggcatgcggatgttatggtgtacggatgggtaggaggaaaacatgcatgtgtagacttgactggggtttcacaacttgtgggattaggt 17344795  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    ||  |  ||||||| |||||  || ||| ||| |||| ||| ||||  || ||||||||||| |||||| | |||| | ||| |||||||| ||||||||    
T  17344794 gtcagaccttttaccgtaggaaagccagtccttaaagctgcgtcaagtaaggtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttatac 17344695  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| ||||||||||||  |||||||    
T  17344694 catttgcttttgacactttcagtttcct 17344667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 44686598 - 44686490
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| |||||||| |||||||||||| |||| ||||||| |||||||| ||  |||| ||| |||||||||||||||||||| |||||    
T  44686598 tttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctg-gtcaagcaatgtggccaaacatgagaaagcgtgttc 44686500  T
Q  196 tgacagtcaa 205  Q
    ||||| ||||    
T  44686499 tgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 1296031 - 1296111
Alignment:
Q  149 ctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgttttt 229  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||||||||| | |||||||||||||||| ||| |||||    
T  1296031 ctaaaagctgcgtcaaacaaaatggccaaacatgagaaaatatgttctgacaataaacatgtttttatacctttttttttt 1296111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 13147096 - 13147175
Alignment:
Q  167 aaagtggccaaacatgagaaagcatgttctgacagtcaacatgt---ttttataccatttgtttttgacacttttggttt 243  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||| |   |||||||||||||| ||||||||||||||||||    
T  13147096 aaagtggtcaaacatgagaaagcgtgttctgacaatcagcatatactttttataccatttgattttgacacttttggttt 13147175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 27502540 - 27502400
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||  |||| ||||||||  | ||||||||| |||| || | | ||||||||| ||| |||| |||||||| ||||||||||||| | |||||    
T  27502540 tttcaccacttgtgggtttaggggtcagagcttttacgataggaca-ataaccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttc 27502442  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
     ||||  ||||||| |||||||| |||  |||||||||||||    
T  27502441 cgacaaacaacatgcttttatacaattgctttttgacacttt 27502400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 34814812 - 34814893
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtt 242  Q
    ||||| ||||||  ||||||||||||||| |||||||||| |||| ||| |||||||||||||| ||| |||||||| ||||    
T  34814812 tcaaataaagtgatcaaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacactttcggtt 34814893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Original strand, 18744956 - 18745019
Alignment:
Q  170 gtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgaca 233  Q
    ||||||||||| |||||||| |||||||||| |||||||  |||||||||||||| ||||||||    
T  18744956 gtggccaaacacgagaaagcgtgttctgacaatcaacatacttttataccatttgcttttgaca 18745019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 3825894 - 3825764
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt-ctgacagtcaac 206  Q
    |||||||||||||  || ||||||||||| | |||| ||||||||||| ||| |||| |||||||| ||||||||| ||||  | || |||||| || ||    
T  3825894 tgggattaggggtcaggacttttacggtatgacagagagccctaaaagctgcgtcaagcaaagtggtcaaacatgaaaaagttttttcctgacaatctac 3825795  T
Q  207 atgtttttataccatttgtttttgacacttt 237  Q
    ||||||||||  |||||| ||  ||||||||    
T  3825794 atgtttttatttcatttgcttcagacacttt 3825764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 33612555 - 33612625
Alignment:
Q  176 aaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||||| | |||| ||||| |||||||| |||||||| |||||| |||||||||||||| |||||    
T  33612555 aaacatgagaaaacgtgttttgacaatcaacatgattttatacaatttgtatttgacacttttggcttcct 33612625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 2886638 - 2886692
Alignment:
Q  191 tgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 245  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||| |||||||    
T  2886638 tgttctgacaatcaacatgtttttatatcatttgtttttgatattttcggtttcc 2886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 5679392 - 5679314
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttg 239  Q
    |||| |||||||||||||||||||||| ||||||  || | |||||||  ||| ||||||||| | |||||||||||||    
T  5679392 tcaagcaaagtggccaaacatgagaaaacatgttaagataatcaacatcctttcataccatttatgtttgacacttttg 5679314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 17344636 - 17344570
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  17344636 agttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggatt 17344570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 41868017 - 41868083
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgtttacgaagatt 320  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||||| ||||    
T  41868017 agttcaaaaggtcatgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggatt 41868083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 20142753 - 20142800
Alignment:
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggttt 243  Q
    ||||| |||||||| |||||||||||||  ||||||||||||||||||    
T  20142753 tgacaatcaacatgcttttataccattttcttttgacacttttggttt 20142800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 173
Target Start/End: Complemental strand, 9675096 - 9674946
Alignment:
Q  24 acacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttg 122  Q
    |||||||| ||||||||||||||| ||||| |||| ||| ||||||| ||  ||| | |  ||||||   |  ||||||||||||||||||||||| |      
T  9675096 acacttagacatgcagatgttatgatgtacgaatgagtaggaggaaaacatgcatgtatgaacttgattggggtttcaccactcatgggattagggatca 9674997  T
Q  123 gggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtgg 173  Q
    |  |||||| |||||| || | ||||||||||  ||| |||||||||||||    
T  9674996 gaccttttatggtaggacaaatagccctaaaatatgcgtcaaacaaagtgg 9674946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 13413349 - 13413291
Alignment:
Q  254 agttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtgttta 312  Q
    |||||||| ||||||||| |||||||||||  |||| |||||  |||||||||||||||    
T  13413349 agttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta 13413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 44720427 - 44720374
Alignment:
Q  171 tggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttg 224  Q
    ||||||||||||| ||| | |||| ||||| |||||||||||||||||| ||||    
T  44720427 tggccaaacatgaaaaaacgtgttatgacaatcaacatgtttttataccgtttg 44720374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 33428 - 33279
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    |||||||||| ||||||||||| || ||| ||||||||||||| ||| || || |||| || ||||||| ||||||||| |||||||||||||| |||||    
T  33428 tttcaccacttatgggattaggtgtcgggccttttacggtaggacaggcaaccttaaa-gtggcatcaagcaaagtggctaaacatgagaaagcgtgttc 33330  T
Q  196 tgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||| ||||||||||||||||||||||  |||||||| ||| ||||||||    
T  33329 tgacaatcaacatgtttttataccatttacttttgacattttcggtttcct 33279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 18292 - 18441
Alignment:
Q  95 atttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgtt 194  Q
    ||||||| |||| |||||||| |||| || ||||||| | |||| || ||| |||||||||||||||||||||||| |||||||||||||||| | ||||    
T  18292 atttcactactcgtgggattacgggtcggagcttttatgataggacaaacaaccctaaaagttgcatcaaacaaagcggccaaacatgagaaa-cgtgtt 18390  T
Q  195 ctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcc 245  Q
    || ||| |||||||||||||||  ||| || |||||||||||||| |||||    
T  18391 ctcacaatcaacatgtttttatgtcatctgcttttgacacttttgatttcc 18441  T

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Target: scaffold0186 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 246
Target Start/End: Complemental strand, 10543 - 10389
Alignment:
Q  96 tttcaccactcatgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttc 195  Q
    ||||||||||| ||||||||||||||||||||||||| || || ||  |||||||||||||||| ||||  ||| ||||||||||||| || || |||||    
T  10543 tttcaccactcgtgggattaggggttggggcttttacagttggacaagcagccctaaaagttgcgtcaagtaaaatggccaaacatgataatgcgtgttc 10444  T
Q  196 tga----cagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||    || |||||||| |||||||||||||| ||||||||||| ||| |||||    
T  10443 tgacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcct 10389  T

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Target: scaffold0110 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 47390 - 47617
Alignment:
Q  20 atcaacacttagtcatgcagatgttatggtgtacaaatgggtaagaggaaacact-catttgtagacttgaccagtatttcaccactcatgggattaggg 118  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||| ||| ||| | | ||  ||| |||||||   |  ||||||||||  |||||||||||    
T  47390 atcaacacttagggatgcaaatgttatggtgtacaaatgagtatgagaaaaaaatgcaagtgtggacttgattggggtttcaccacttgtgggattaggg 47489  T
Q  119 gttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
     ||| | ||||||||||||| || | |  |||||||||||| ||||  ||| |||||||||||||||||   |||||||||||| ||||| |||||||||    
T  47490 attgagacttttacggtaggacaaataaacctaaaagttgcgtcaagtaaaatggccaaacatgagaaaatgtgttctgacagttaacatatttttatac 47589  T
Q  219 catttgtttttgacacttttggtttcct 246  Q
    |||||| |||| ||||||| | ||||||    
T  47590 catttgcttttaacactttcgatttcct 47617  T

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Target: scaffold1768 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 54 - 259
Alignment:
Q  39 gatgttatggtgtacaaatgggtaagaggaaa-cactcatttgtagacttgaccagtatttcaccactcatgggattaggggttggggcttttacggtag 137  Q
    ||||||||| |||||  ||||||| ||||||| ||  ||| | ||||||||||  |  ||||||||||  |||||||| | || ||| ||||||| ||||    
T  54 gatgttatgatgtacggatgggtaggaggaaaacatgcatgtatagacttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtag 153  T
Q  138 ggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    | ||| |||||||||||  ||| |||| |||||||||||||||||||| ||   ||| ||||  |||||||| ||||||||||||||| |||||||||||    
T  154 gacaggcagccctaaaaactgcgtcaagcaaagtggccaaacatgagacagtgggttatgaccatcaacatgcttttataccatttgtgtttgacacttt 253  T
Q  238 tggttt 243  Q
    ||||||    
T  254 tggttt 259  T

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Target: scaffold0031 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 49542 - 49449
Alignment:
Q  144 cagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttt 237  Q
    |||||||||||||||||||||||||||||| ||||  ||||||| | |||||||||| ||||| || |||||||||||||| ||||||||||||    
T  49542 cagccctaaaagttgcatcaaacaaagtggtcaaatgtgagaaatcgtgttctgacaatcaacgtgcttttataccatttgcttttgacacttt 49449  T

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Target: scaffold0009 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 103272 - 103135
Alignment:
Q  108 tgggattaggggttggggcttttacggtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaaca 207  Q
    |||||| ||| || ||| ||||||| ||||| ||| ||||||| |||| ||| ||||  ||  |||||||||| |||||||| ||| |||||| ||||||    
T  103272 tgggataaggtgtcgggccttttaccgtaggacaggcagccctcaaagctgcgtcaagtaagatggccaaacacgagaaagcgtgt-ctgacaatcaaca 103174  T
Q  208 tgtttttataccatttgtttttgacacttttggtttcct 246  Q
    || |||||||||||||| |||||||||||| ||||||||    
T  103173 tgcttttataccatttgcttttgacactttcggtttcct 103135  T

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Target: scaffold0493 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 8525 - 8594
Alignment:
Q  177 aacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||    
T  8525 aacatgagaaaacatgttctgacaatcaacatgtttttataccatttgcgtttaacacttttggtttcct 8594  T

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Target: scaffold0119 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 16275 - 16191
Alignment:
Q  134 gtagggcagacagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttatac 218  Q
    ||||| |||||| | ||||||| ||| ||||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||    
T  16275 gtaggacagacaacgctaaaagctgcgtcaaacaaaatggccaaacatgagaaaacatgttctgacaataaacatgtttttatac 16191  T

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Target: scaffold0470 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 7727 - 7631
Alignment:
Q  150 taaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttataccatttgtttttgacacttttggtttcct 246  Q
    |||||||||| ||||| | ||| |  |||||||||||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||||  |||||||    
T  7727 taaaagttgcgtcaaatagagtagttaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcct 7631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 37444 - 37391
Alignment:
Q  161 tcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgttttt 214  Q
    ||||||||| ||  ||||||||||||||||| |||||||| |||||||||||||    
T  37444 tcaaacaaaatgatcaaacatgagaaagcatattctgacaatcaacatgttttt 37391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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