View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9206_low_13 (Length: 350)
Name: NF9206_low_13
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9206_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 97 - 347
Target Start/End: Original strand, 19824359 - 19824609
Alignment:
| Q |
97 |
aaattttacaagataaggcaactgaatttaagatcattgattgttttaaagcttagcggagatcgaaatgatctacgagattgcaatatatggttcagat |
196 |
Q |
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| T |
19824359 |
aaattttacaagataaggcaattgaatttaagatcattgattgttttaaagcttggcggagatcgaaaagatctacgagattgcaatatatggttcagat |
19824458 |
T |
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| Q |
197 |
gaagagaagatttctgccgctaccattctgggatggaggaatgcacaggtaatcctaacactttagctgcagagaaaatacaactgttttcttgcttagt |
296 |
Q |
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| T |
19824459 |
gaagagaagatttctgccgctaccattctgggatggaggaatgcacaggtaatcctaacactttagctacagagaaaatacaactgttttcttgcttagt |
19824558 |
T |
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| Q |
297 |
tctattaatacaactttaatttttaattataatttctataacaccaaactc |
347 |
Q |
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| T |
19824559 |
tctattaatacaactttaatttttaattataatttctataacacaaaactc |
19824609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 19827413 - 19827566
Alignment:
| Q |
66 |
gaatgctgggtacattagatcctcnnnnnnnaaattttacaagataaggcaactgaatttaagatcattgattgttttaaagcttagcggagatcgaaat |
165 |
Q |
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| T |
19827413 |
gaatgctgggtacattagatgctctttttttaaattttacaagataaggcaactgaatttaagatcattgattgttttaaagcttagcggagatcgaaaa |
19827512 |
T |
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| Q |
166 |
gatctacgagattgcaatatatggttcagatgaagagaagatttctgccgctac |
219 |
Q |
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| T |
19827513 |
gatctacgagattgcaatatatggttcagatgaagagaagatttctgccgctac |
19827566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 37645515 - 37645639
Alignment:
| Q |
102 |
ttacaagataaggcaactgaatttaagatcattgattgttttaaagcttagcggagatcgaaatgatctacgagattgcaatatatggttcagatgaaga |
201 |
Q |
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||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | | || || ||| |||| |||||||||||||||| |
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| T |
37645515 |
ttacaaggtaaggcaactgaatttaagctcattgatttgattaaagcttagcggagatcgaaaaggtttatgaaattacaattgatggttcagatgaaga |
37645614 |
T |
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| Q |
202 |
gaagatttctgccgctaccattctg |
226 |
Q |
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|||||||||||| |||||||||||| |
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| T |
37645615 |
gaagatttctgctgctaccattctg |
37645639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 37645672 - 37645726
Alignment:
| Q |
241 |
acaggtaatcctaacactttagctgcagagaaaatacaactgttttcttgcttagtt |
297 |
Q |
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| T |
37645672 |
acaggtaatcctaacactt--gctacagagagaatacaactgttttcttgcttagtt |
37645726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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