View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9206_low_17 (Length: 281)
Name: NF9206_low_17
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9206_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23117067 - 23117310
Alignment:
| Q |
1 |
atgatgttattaataatcagtttccactctttcaccttgtcctcaaggtgacacttttnnnnnnnagtattgttagtagacttcctattaaaaaggtgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
23117067 |
atgatgttattaataatcagtttccactctttcaccttgaggacaaggtgaaacttttgggggggagtattgttagtagacctcctattaaaaaggtgta |
23117166 |
T |
|
| Q |
101 |
tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcat---ttg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23117167 |
tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcatcggttg |
23117266 |
T |
|
| Q |
198 |
ttttatggtttgggtttggtttgggagattctaggctctctaag |
241 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23117267 |
ttttatggtttgggtttggtttgggagattctaggctctctaag |
23117310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 23112339 - 23112512
Alignment:
| Q |
71 |
tgttagtagacttcctattaaaaaggtgtatgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaa |
170 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23112339 |
tgttagtagacctcctattaaaaaggtgtatgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaa |
23112438 |
T |
|
| Q |
171 |
taagagtgacatttttagtgtcat---ttgttttatggtttgggtttggtttgggagattctaggctctctaag |
241 |
Q |
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| T |
23112439 |
taagagtgacatttttagtgtcatcggttgttttatggtttgggtttggtttgggagattctaggctctctaag |
23112512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25064288 - 25064531
Alignment:
| Q |
1 |
atgatgttattaataatcagtttccactctttcaccttgtcctcaaggtgacacttttnnnnnnnagtattgttagtagacttcctattaaaaaggtgta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
25064288 |
atgatgttattaataatcagtttccactctttcaccttgaggacaaggtgaaacttttgggggggagtattgttagtagacctcctattaaaaaggtgta |
25064387 |
T |
|
| Q |
101 |
tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcat---ttg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25064388 |
tgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaataagagtgacatttttagtgtcatcggttg |
25064487 |
T |
|
| Q |
198 |
ttttatggtttgggtttggtttgggagattctaggctctctaag |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25064488 |
ttttatggtttgggtttggtttgggagattctaggctctctaag |
25064531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 25059559 - 25059732
Alignment:
| Q |
71 |
tgttagtagacttcctattaaaaaggtgtatgtgaggaataagtttaaaagcccaatcaattaggcccaattgaggtggctagttttgctttaaatagaa |
170 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25059559 |
tgttagtagacctcctattaaaaaggtgtatgtgaggaataagtttaaaagccctatcaattaggcccaattgaggtggctagttttgctttaaatagaa |
25059658 |
T |
|
| Q |
171 |
taagagtgacatttttagtgtcat---ttgttttatggtttgggtttggtttgggagattctaggctctctaag |
241 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25059659 |
taagagtgacatttttagtgtcatcggttgttttatggtttgggtttggtttgggagattctaggctctctaag |
25059732 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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