View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_low_18 (Length: 252)

Name: NF9206_low_18
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9206_low_18
NF9206_low_18
[»] chr7 (4 HSPs)
chr7 (95-212)||(24718209-24718325)
chr7 (15-71)||(24718130-24718186)
chr7 (15-66)||(43032449-43032500)
chr7 (122-212)||(43032299-43032388)
[»] chr5 (5 HSPs)
chr5 (95-212)||(42268632-42268749)
chr5 (15-66)||(40599876-40599927)
chr5 (15-66)||(12156482-12156533)
chr5 (15-66)||(26331079-26331130)
chr5 (15-58)||(42268785-42268828)
[»] chr3 (3 HSPs)
chr3 (95-211)||(31699417-31699533)
chr3 (15-66)||(18269795-18269846)
chr3 (207-252)||(21558098-21558143)
[»] chr2 (2 HSPs)
chr2 (95-212)||(9910838-9910955)
chr2 (16-71)||(9910752-9910807)
[»] chr1 (5 HSPs)
chr1 (15-71)||(2077363-2077419)
chr1 (144-212)||(2077246-2077313)
chr1 (15-63)||(10494898-10494946)
chr1 (15-66)||(15496008-15496059)
chr1 (15-44)||(26842003-26842032)
[»] chr8 (2 HSPs)
chr8 (95-179)||(23636051-23636135)
chr8 (15-71)||(23635964-23636020)
[»] scaffold0092 (1 HSPs)
scaffold0092 (15-66)||(23305-23356)
[»] chr4 (1 HSPs)
chr4 (26-67)||(55728842-55728883)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 24718209 - 24718325
Alignment:
Q  95 ccaactcacaaccttttaatcgttaataccaaaatataaccaccacacgaaaaagacaccatttacgtttcaactcccaacccaacaataaaaacaatat 194  Q
    ||||||||||| ||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  24718209 ccaactcacaagcttctaatcattaataccaaaatatcaccaccacacaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaacaa-at 24718307  T
Q  195 gtaaccaacaccaataac 212  Q
    ||||||||||||||||||    
T  24718308 gtaaccaacaccaataac 24718325  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 24718130 - 24718186
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccacatacgg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24718130 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccacagacgg 24718186  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 43032500 - 43032449
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  43032500 cacaaaagaccgagtatcaacaccaccatataaaccaccacgaagcaccaca 43032449  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 43032388 - 43032299
Alignment:
Q  122 accaaaatataaccaccacacgaaaaagacaccatttacgtttcaactcccaacccaacaataaaaacaatatgtaaccaacaccaataac 212  Q
    |||||||||| |||||||| | ||||| ||||||||||| ||  ||||||||||||||| |  |||||  |||||||||||||||||||||    
T  43032388 accaaaatatcaccaccacgcaaaaaatacaccatttacattctaactcccaacccaac-agcaaaaccttatgtaaccaacaccaataac 43032299  T

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Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 42268749 - 42268632
Alignment:
Q  95 ccaactcacaaccttttaatcgttaataccaaaatataaccaccacacgaaaaagacaccatttacgtttcaactcccaacccaacaataaaaacaatat 194  Q
    |||||||||||  || ||||| |||| |||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42268749 ccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaacaatat 42268650  T
Q  195 gtaaccaacaccaataac 212  Q
    ||||||||||||||||||    
T  42268649 gtaaccaacaccaataac 42268632  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 40599927 - 40599876
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    ||||||||||| ||||||||||||||| || |||||| ||||||||||||||    
T  40599927 cacaaaagacctagtatcaacaccaccgtgaaaaccaccacgaagcaccaca 40599876  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 12156482 - 12156533
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    ||||||| ||||| |||||||||||||||| |||||| |||||| |||||||    
T  12156482 cacaaaaaacccaatatcaacaccaccatggaaaccaccacgaaccaccaca 12156533  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 26331130 - 26331079
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    |||||||||| || |||||||||||||||  |||||| ||||||||||||||    
T  26331130 cacaaaagactcaatatcaacaccaccatagaaaccaccacgaagcaccaca 26331079  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 42268828 - 42268785
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaa 58  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||    
T  42268828 cacaaaatacccaatatcaacaccacaatgtaaaccagcacgaa 42268785  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 31699417 - 31699533
Alignment:
Q  95 ccaactcacaaccttttaatcgttaataccaaaatataaccaccacacgaaaaagacaccatttacgtttcaactcccaacccaacaataaaaacaatat 194  Q
    ||||||||||| ||| ||||| | || |||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||| ||||||  ||     
T  31699417 ccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatacaaaaaagacaccatttacgttccaactcccaacccaacaacaaaaaccttac 31699516  T
Q  195 gtaaccaacaccaataa 211  Q
    ||| |||||||| ||||    
T  31699517 gtagccaacacctataa 31699533  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 18269846 - 18269795
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    |||||||||||||  ||||||||||||||| |||||| || |||||||||||    
T  18269846 cacaaaagacccaaaatcaacaccaccatgaaaaccaccatgaagcaccaca 18269795  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 21558143 - 21558098
Alignment:
Q  207 aataacacccgctcttacttcacggctggtgtccccggatctttct 252  Q
    ||||| || ||||| |||||| ||||||||||||||||||||||||    
T  21558143 aataatactcgctcctacttcgcggctggtgtccccggatctttct 21558098  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 9910838 - 9910955
Alignment:
Q  95 ccaactcacaaccttttaatcgttaataccaaaatataaccaccacacgaaaaagacaccatttacgtttcaactcccaacccaacaataaaaacaatat 194  Q
    |||||| |||| ||| ||||| | || |||||||||| |||||||| | ||||| |||||||||| |||  ||||||||||||||||  ||||||  |||    
T  9910838 ccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaatacaccatttaagttcaaactcccaacccaacaggaaaaaccttat 9910937  T
Q  195 gtaaccaacaccaataac 212  Q
    |||||||||||| |||||    
T  9910938 gtaaccaacacctataac 9910955  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 9910752 - 9910807
Alignment:
Q  16 acaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccacatacgg 71  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  9910752 acaaaagacccagtatcaacaccatcatggaaaccaccacgaagcaccacaaacgg 9910807  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 2077419 - 2077363
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccacatacgg 71  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||    
T  2077419 cacaaaagacccagtatcaacaccaccatggaaaccaccacgaagtaccacaaacgg 2077363  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 2077313 - 2077246
Alignment:
Q  144 aaaaagacaccatttacgtttcaactcccaacccaacaataaaaacaatatgtaaccaacaccaataac 212  Q
    ||||||||||||||||| || ||| |||||||||||||  ||||||  |||||||||| ||||||||||    
T  2077313 aaaaagacaccatttacattccaaatcccaacccaacatcaaaaac-ctatgtaaccatcaccaataac 2077246  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 10494898 - 10494946
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcacc 63  Q
    ||||||||||||| |||||||||||||||| |||||| ||| |||||||    
T  10494898 cacaaaagacccaatatcaacaccaccatgaaaaccatcacaaagcacc 10494946  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 15496008 - 15496059
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    ||||||||||| ||||||| |||||||||| |||||| |||||| |||||||    
T  15496008 cacaaaagaccaagtatcagcaccaccatgaaaaccaccacgaaacaccaca 15496059  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 26842032 - 26842003
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatg 44  Q
    ||||||||||||||||||||||||||||||    
T  26842032 cacaaaagacccagtatcaacaccaccatg 26842003  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 23636051 - 23636135
Alignment:
Q  95 ccaactcacaaccttttaatcgttaataccaaaatataaccaccacacgaaaaagacaccatttacgtttcaactcccaacccaa 179  Q
    ||||||||||  ||| ||||| | || || ||||||| |||||||| | ||||||||| |||||||||| |||||||||||||||    
T  23636051 ccaactcacatgcttataatcatcaacactaaaatatcaccaccacgcaaaaaagacatcatttacgttccaactcccaacccaa 23636135  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 23635964 - 23636020
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccacatacgg 71  Q
    ||||||| ||| |||||||||||||||||| |||||| || ||||||||||| ||||    
T  23635964 cacaaaaaacctagtatcaacaccaccatggaaaccaccatgaagcaccacaaacgg 23636020  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 23305 - 23356
Alignment:
Q  15 cacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccaca 66  Q
    ||||||||||| ||||||| |||||||||| |||||| ||| ||||||||||    
T  23305 cacaaaagacctagtatcagcaccaccatggaaaccaccacaaagcaccaca 23356  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 55728842 - 55728883
Alignment:
Q  26 cagtatcaacaccaccatgtaaaccagcacgaagcaccacat 67  Q
    ||||||||||||||||||| |||||| |||||| ||||||||    
T  55728842 cagtatcaacaccaccatggaaaccaccacgaaccaccacat 55728883  T

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