View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_low_2 (Length: 641)

Name: NF9206_low_2
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9206_low_2
NF9206_low_2
[»] chr5 (4 HSPs)
chr5 (14-629)||(38093681-38094288)
chr5 (592-629)||(17783364-17783401)
chr5 (497-539)||(30862113-30862155)
chr5 (593-629)||(40796754-40796790)
[»] chr4 (5 HSPs)
chr4 (571-629)||(26475281-26475339)
chr4 (494-540)||(17798655-17798701)
chr4 (563-626)||(5467054-5467116)
chr4 (494-532)||(2040865-2040903)
chr4 (494-532)||(49282514-49282552)
[»] chr1 (3 HSPs)
chr1 (501-629)||(15840502-15840633)
chr1 (502-629)||(30655957-30656086)
chr1 (494-532)||(3734653-3734691)
[»] chr8 (1 HSPs)
chr8 (497-601)||(12514009-12514115)
[»] chr3 (2 HSPs)
chr3 (569-626)||(7424545-7424602)
chr3 (574-627)||(12221069-12221122)
[»] chr2 (1 HSPs)
chr2 (584-629)||(8520767-8520812)
[»] scaffold0036 (4 HSPs)
scaffold0036 (494-530)||(63845-63881)
scaffold0036 (494-530)||(68987-69023)
scaffold0036 (570-629)||(63927-63986)
scaffold0036 (570-629)||(69069-69128)
[»] chr6 (2 HSPs)
chr6 (499-539)||(28557426-28557466)
chr6 (501-532)||(14752230-14752261)
[»] scaffold0620 (2 HSPs)
scaffold0620 (551-609)||(4212-4269)
scaffold0620 (551-609)||(6277-6334)
[»] chr7 (2 HSPs)
chr7 (584-629)||(28006997-28007042)
chr7 (499-535)||(23144619-23144655)


Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 14 - 629
Target Start/End: Complemental strand, 38094288 - 38093681
Alignment:
Q  14 caataaaaatcacaatcctcaatgaagctcttatttagttgcttgtgcaattatgttactcaatgaacttgcctcttctttggcagcttccactaactcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38094288 caataaaaatcacaatcctcaatgaagctcttatttagttgcttgtgcaattatgttactcaatgaacttgcctcttctttggcagcttccactaactcc 38094189  T
Q  114 tcctacaaaacataccataaaatcaaagtaacataagatcaattgatcaatttttcatcaaacacaaggtaataaaaaacatatgtggaggaatggaagg 213  Q
    ||||||||||||||||||||||||||||||||| || |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38094188 tcctacaaaacataccataaaatcaaagtaacaaaaaatcaatt--------tttcatcaaacacaaggtaataaaaaacatatgtggaggaatggaagg 38094097  T
Q  214 actaatttgaagttatacttgtgcagctatcaatcttaaagtagttcttttgcttgtctcttgcatcattccagctaacataacttcatccaatataaaa 313  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38094096 actaatttgaagttacacctgtgcagctatcaatcttaaagtagttcttttgctagtctcttgcatcattccagctaacataacttcatccaatataaaa 38093997  T
Q  314 tatgcctgataacataaacattaactttaattaactattgatagtaaaatgtgtacattatgattctaattataggactcaattaactaaccaattgagt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38093996 tatgcctgataacataaacattaactttaattaactattgatagtaaaatgtgtacattatgattctaattataggactcaattaactaaccaattgagt 38093897  T
Q  414 aactaacttcactaactcataactgaccaactaattctaactcacttaacacattttgaagatcttattattannnnnnnaacggcaaaatttattaata 513  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  38093896 aactaacttcactaactcatacctgaccaactaattctaactgacttaacacattttgaagatcttattattatttttttaacggcaaaatttattaata 38093797  T
Q  514 atcaagtccctgcacaagatgaacaggaactaagacagaactacaaaacaaaacggcgtcgtatatagacggaacacccaaaagaaaatgcatacatcgt 613  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  38093796 atcaagtccctgcataagatgaacaggaactaagacagaactacaaaacaaaacggcgtcgtatatagacggaacgtccaaaaaaaaatgcatacatcgt 38093697  T
Q  614 acatcttaaacaccaa 629  Q
    ||||||||||||||||    
T  38093696 acatcttaaacaccaa 38093681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 592 - 629
Target Start/End: Complemental strand, 17783401 - 17783364
Alignment:
Q  592 caaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||||||||||||||| |||||||||||||||||||    
T  17783401 caaaagaaaatgcatacaccgtacatcttaaacaccaa 17783364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 30862155 - 30862113
Alignment:
Q  497 ggcaaaatttattaataatcaagtccctgcacaagatgaacag 539  Q
    |||||||||||||||||||| |||||||||| | |||||||||    
T  30862155 ggcaaaatttattaataatcgagtccctgcatatgatgaacag 30862113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 593 - 629
Target Start/End: Complemental strand, 40796790 - 40796754
Alignment:
Q  593 aaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  40796790 aaaagaaaatacatacatcgtacatcataaacaccaa 40796754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 571 - 629
Target Start/End: Complemental strand, 26475339 - 26475281
Alignment:
Q  571 gtcgtatatagacggaacacccaaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  26475339 gtcgtatatagacggaacatccaaaacaaaatgcatacatcggacatcttaaacaccaa 26475281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 540
Target Start/End: Complemental strand, 17798701 - 17798655
Alignment:
Q  494 aacggcaaaatttattaataatcaagtccctgcacaagatgaacagg 540  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  17798701 aacggcaaaatttattaataatcaagttcctgcacaacatgaacagg 17798655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 626
Target Start/End: Original strand, 5467054 - 5467116
Alignment:
Q  563 aaaacggcgtcgtatatagacggaacacccaaaagaaaatgcatacatcgtacatcttaaacac 626  Q
    |||| |||| |||||||||| ||||||||||||||||||| ||| ||| ||||||| |||||||    
T  5467054 aaaatggcgccgtatatagatggaacacccaaaagaaaatacat-cattgtacatcataaacac 5467116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 532
Target Start/End: Original strand, 2040865 - 2040903
Alignment:
Q  494 aacggcaaaatttattaataatcaagtccctgcacaaga 532  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  2040865 aacggcaaaatttattaataaccaaatccctgcacaaga 2040903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 532
Target Start/End: Complemental strand, 49282552 - 49282514
Alignment:
Q  494 aacggcaaaatttattaataatcaagtccctgcacaaga 532  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  49282552 aacggcaaaatttattaataaacaagtctctgcacaaga 49282514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 501 - 629
Target Start/End: Original strand, 15840502 - 15840633
Alignment:
Q  501 aaatttattaataatcaagtccctgcacaagatgaaca-ggaac--taagacagaa-ctacaaaacaaaacggcgtcgtatatagacggaacacccaaaa 596  Q
    |||||||||||| | ||||||||||||||||| ||||| ||||   ||||||| || |||||||  |||| |||  ||||||||| | ||||||||||||    
T  15840502 aaatttattaatcaccaagtccctgcacaagaagaacatggaatggtaagacataaactacaaagaaaaa-ggcaacgtatataggcagaacacccaaaa 15840600  T
Q  597 gaaaatgcatacatcgtacatcttaaacaccaa 629  Q
     |||||||||||| ||||| |||||||||||||    
T  15840601 taaaatgcatacaccgtacttcttaaacaccaa 15840633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 502 - 629
Target Start/End: Complemental strand, 30656086 - 30655957
Alignment:
Q  502 aatttattaataatcaagtccctgcacaagatgaacaggaact---aagacagaa-ctacaaaacaaaacggcgtcgtatatagacggaacacccaaaag 597  Q
    ||||||||||||| ||||| | ||||||||| ||||||| |||   || |||||| ||||||| | ||| |||  ||||||||| | |||||||||||||    
T  30656086 aatttattaataaccaagttcttgcacaagacgaacagggactggtaaaacagaaactacaaagccaaa-ggcaccgtatataggcagaacacccaaaag 30655988  T
Q  598 aaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||||||| | ||||||||||||| |||||    
T  30655987 aaaatgcata-accgtacatcttaaataccaa 30655957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 532
Target Start/End: Original strand, 3734653 - 3734691
Alignment:
Q  494 aacggcaaaatttattaataatcaagtccctgcacaaga 532  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  3734653 aacgacaaaatttattaataatcaagtctctgcacaaga 3734691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 601
Target Start/End: Complemental strand, 12514115 - 12514009
Alignment:
Q  497 ggcaaaatttattaataatcaagtccctgcacaagatgaacaggaac---taagacagaactacaaaacaaaacggcgtcgtatatagacggaacaccca 593  Q
    ||||||||||||||||||| | ||  ||||||| || ||||||| ||   ||||||||||| |||| | |||| |||||||||| ||| |||||||||||    
T  12514115 ggcaaaatttattaataattaggtttctgcacacgacgaacagggaccaataagacagaacaacaata-aaaagggcgtcgtatgtaggcggaacaccca 12514017  T
Q  594 aaagaaaa 601  Q
    ||||||||    
T  12514016 aaagaaaa 12514009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 569 - 626
Target Start/End: Original strand, 7424545 - 7424602
Alignment:
Q  569 gcgtcgtatatagacggaacacccaaaagaaaatgcatacatcgtacatcttaaacac 626  Q
    ||||||||||||| |||||||||||||| ||||||| |||| | || |||||||||||    
T  7424545 gcgtcgtatataggcggaacacccaaaacaaaatgcgtacaccatatatcttaaacac 7424602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 627
Target Start/End: Complemental strand, 12221122 - 12221069
Alignment:
Q  574 gtatatagacggaacacccaaaagaaaatgcatacatcgtacatcttaaacacc 627  Q
    |||||||| ||||||||||||||  ||||||||||| |||| ||||| ||||||    
T  12221122 gtatataggcggaacacccaaaacgaaatgcatacaccgtatatctttaacacc 12221069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 8520812 - 8520767
Alignment:
Q  584 ggaacacccaaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||    
T  8520812 ggaacacccaaaagaaaatgcatacgccgtacatcttatacaccaa 8520767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 63845 - 63881
Alignment:
Q  494 aacggcaaaatttattaataatcaagtccctgcacaa 530  Q
    ||||||||||||||||||||| |||||||||||||||    
T  63845 aacggcaaaatttattaataaccaagtccctgcacaa 63881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 68987 - 69023
Alignment:
Q  494 aacggcaaaatttattaataatcaagtccctgcacaa 530  Q
    ||||||||||||||||||||| |||||||||||||||    
T  68987 aacggcaaaatttattaataaccaagtccctgcacaa 69023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 629
Target Start/End: Original strand, 63927 - 63986
Alignment:
Q  570 cgtcgtatatagacggaacacccaaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||||||||||||||| ||||||||  ||  |||||||  ||||||||||||||||||    
T  63927 cgtcgtatatagacggaatacccaaaatgaagagcatacactgtacatcttaaacaccaa 63986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 629
Target Start/End: Original strand, 69069 - 69128
Alignment:
Q  570 cgtcgtatatagacggaacacccaaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||||||||||||||| ||||||||  ||  |||||||  ||||||||||||||||||    
T  69069 cgtcgtatatagacggaatacccaaaatgaagagcatacactgtacatcttaaacaccaa 69128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 28557466 - 28557426
Alignment:
Q  499 caaaatttattaataatcaagtccctgcacaagatgaacag 539  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  28557466 caaaatttatcaataatcaagtccatgcacaagatgaacag 28557426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 532
Target Start/End: Original strand, 14752230 - 14752261
Alignment:
Q  501 aaatttattaataatcaagtccctgcacaaga 532  Q
    ||||||||||||||||||||||||||||||||    
T  14752230 aaatttattaataatcaagtccctgcacaaga 14752261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 4269 - 4212
Alignment:
Q  551 gaactacaaaacaaaacggcgtcgtatatagacggaacacccaaaagaaaatgcataca 609  Q
    |||| ||||||||||  |||||||||||||| || ||||||||||||||||| ||||||    
T  4269 gaacaacaaaacaaag-ggcgtcgtatataggcgaaacacccaaaagaaaattcataca 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 6334 - 6277
Alignment:
Q  551 gaactacaaaacaaaacggcgtcgtatatagacggaacacccaaaagaaaatgcataca 609  Q
    |||| ||||||||||  |||| ||||||||| |||||||||||||||||||| ||||||    
T  6334 gaacaacaaaacaaag-ggcggcgtatataggcggaacacccaaaagaaaattcataca 6277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 629
Target Start/End: Complemental strand, 28007042 - 28006997
Alignment:
Q  584 ggaacacccaaaagaaaatgcatacatcgtacatcttaaacaccaa 629  Q
    |||||| ||||||| ||||||||||| |||||||| ||||||||||    
T  28007042 ggaacatccaaaaggaaatgcatacaccgtacatcataaacaccaa 28006997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 23144655 - 23144619
Alignment:
Q  499 caaaatttattaataatcaagtccctgcacaagatga 535  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  23144655 caaaatttattaataatcaagtctctgcgcaagatga 23144619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University