View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_low_22 (Length: 232)

Name: NF9206_low_22
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9206_low_22
NF9206_low_22
[»] chr3 (4 HSPs)
chr3 (95-214)||(21366973-21367092)
chr3 (12-99)||(21367291-21367379)
chr3 (44-99)||(25074803-25074858)
chr3 (44-93)||(12704647-12704696)
[»] chr6 (3 HSPs)
chr6 (12-99)||(6389757-6389845)
chr6 (42-99)||(17168451-17168508)
chr6 (50-99)||(34446579-34446628)
[»] chr5 (4 HSPs)
chr5 (12-99)||(39695957-39696044)
chr5 (44-99)||(43554535-43554590)
chr5 (44-99)||(26205750-26205805)
chr5 (12-42)||(6247693-6247723)
[»] chr1 (2 HSPs)
chr1 (44-99)||(42004937-42004992)
chr1 (44-94)||(6936390-6936440)
[»] chr7 (3 HSPs)
chr7 (47-99)||(23930233-23930285)
chr7 (44-99)||(7133268-7133323)
chr7 (48-99)||(29812658-29812709)
[»] chr4 (3 HSPs)
chr4 (49-99)||(20743273-20743323)
chr4 (44-94)||(3144642-3144692)
chr4 (44-93)||(23386166-23386215)
[»] chr2 (4 HSPs)
chr2 (48-99)||(23354646-23354697)
chr2 (48-93)||(11307998-11308043)
chr2 (50-99)||(24011050-24011099)
chr2 (46-94)||(22085023-22085066)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 21367092 - 21366973
Alignment:
Q  95 ccaaacataaaatacaccaaacaaaacctaataaatggagatttaaattcaatattgaaattgaagatacctcgaggagttcagaattggttggatcaag 194  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21367092 ccaaacataaaatacaccaaacaaaacctaataaatggagaattagattcaatattgaaattgaagatacctcgaggagttcagaattggttggatcaag 21366993  T
Q  195 gagaagagcatgatcgatag 214  Q
    ||||||||||||||||||||    
T  21366992 gagaagagcatgatcgatag 21366973  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 21367379 - 21367291
Alignment:
Q  12 agcacagacacttctcggattaggtgtgtcca-gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21367379 agcacagacacttctcggattaggtgtgtccaagtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttctcaaa 21367291  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 25074858 - 25074803
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||| ||||||||||||||  | ||||||||||| ||||||||||||||| ||||    
T  25074858 gtgtcagacaccgacacaacgcctatgattacactcaattatgtcattttctcaaa 25074803  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 12704647 - 12704696
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcatttt 93  Q
    ||||||||||||||||| ||| | ||||||||| | ||||||||||||||    
T  12704647 gtgtccgacaccgacacgacacctatgattacattgaattatgtcatttt 12704696  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 6389845 - 6389757
Alignment:
Q  12 agcacagacacttctcggattaggtgtgtccagtgtccga-caccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||| |||||||||||||||||| |||||| ||||| || ||||||||| ||| | |||||||||||||||||| |||||||| ||||    
T  6389845 agcacggacacttctcggattaggagtgtcccgtgtcggaacaccgacacgacacctatgattacactaaattatatcattttctcaaa 6389757  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 17168451 - 17168508
Alignment:
Q  42 cagtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||||||||||||| ||| | || ||||||||||||||| |||||||| ||||    
T  17168451 cagtgtccgacaccgacacgacacctattattacactaaattatatcattttctcaaa 17168508  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 34446628 - 34446579
Alignment:
Q  50 gacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||||| ||| | ||||||||||| ||||||||||||||| ||||    
T  34446628 gacaccgacacgacacctatgattacactgaattatgtcattttctcaaa 34446579  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 39695957 - 39696044
Alignment:
Q  12 agcacagacacttctcggattaggtgtgtccagtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||| |||||| || |||||||| |||||| ||||| ||||||||||| ||| | |||||||||||||||||| |||||||| ||||    
T  39695957 agcaccgacactcctaggattaggcgtgtcccgtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaa 39696044  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 43554590 - 43554535
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||||||||||| ||| | |||||||||||||||||| |||||||| ||||    
T  43554590 gtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaa 43554535  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 26205750 - 26205805
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    |||||||||||| |||| ||| | ||||||||||| ||||||||||||||| ||||    
T  26205750 gtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 6247723 - 6247693
Alignment:
Q  12 agcacagacacttctcggattaggtgtgtcc 42  Q
    |||||||||||||||||||||||||||||||    
T  6247723 agcacagacacttctcggattaggtgtgtcc 6247693  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 42004937 - 42004992
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  42004937 gtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaa 42004992  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 6936390 - 6936440
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttc 94  Q
    ||||||||||| ||||| ||| | ||||||||||| |||||||||||||||    
T  6936390 gtgtccgacacagacacgacacctatgattacacttaattatgtcattttc 6936440  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 23930285 - 23930233
Alignment:
Q  47 tccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||| ||||    
T  23930285 tccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaa 23930233  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 7133268 - 7133323
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    |||||||||||||||||| || | ||||||||||| ||||||||||||||| ||||    
T  7133268 gtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaa 7133323  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 29812658 - 29812709
Alignment:
Q  48 ccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||||||| ||| | |||||||||||||||||| |||||||| ||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaa 29812709  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 20743273 - 20743323
Alignment:
Q  49 cgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||| ||||    
T  20743273 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaa 20743323  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 3144642 - 3144692
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttc 94  Q
    ||||| ||||||||||| ||| | |||||||||||||||||| ||||||||    
T  3144642 gtgtctgacaccgacacgacacctatgattacactaaattatatcattttc 3144692  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 23386215 - 23386166
Alignment:
Q  44 gtgtccgacaccgacacaacaaccatgattacactaaattatgtcatttt 93  Q
    ||||||||||||||||  ||| | |||||||||||||||||| |||||||    
T  23386215 gtgtccgacaccgacatgacacctatgattacactaaattatatcatttt 23386166  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 23354646 - 23354697
Alignment:
Q  48 ccgacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||||||| ||| | |||||||||||||||||| |||||||| ||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaa 23354697  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 11307998 - 11308043
Alignment:
Q  48 ccgacaccgacacaacaaccatgattacactaaattatgtcatttt 93  Q
    ||||||||||||| ||| | ||||||||||| ||||||||||||||    
T  11307998 ccgacaccgacacgacacctatgattacactgaattatgtcatttt 11308043  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 24011099 - 24011050
Alignment:
Q  50 gacaccgacacaacaaccatgattacactaaattatgtcattttcccaaa 99  Q
    ||||||||| | ||| | ||||||||||||||||||||||||||| ||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaa 24011050  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 22085066 - 22085023
Alignment:
Q  46 gtccgacaccgacacaacaaccatgattacactaaattatgtcattttc 94  Q
    |||||||||||||||||     |||||||||||||||||||||||||||    
T  22085066 gtccgacaccgacacaa-----atgattacactaaattatgtcattttc 22085023  T

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