View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9206_low_24 (Length: 216)

Name: NF9206_low_24

Description: NF9206

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9206_low_24

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 129; E-Value: 6e-67

Query Start/End: Original strand, 36 - 201

Target Start/End: Original strand, 4150693 - 4150858

Alignment:

Q	36	ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct	135	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4150693	ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct	4150792	T

Q	136	ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctg	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4150793	ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctg	4150858	T

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Target: chr3; HSP #2

Raw Score: 129; E-Value: 6e-67

Query Start/End: Original strand, 36 - 201

Target Start/End: Original strand, 4166462 - 4166627

Alignment:

Q	36	ttgctgaaaaagtcacccttggcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttaagaacnnnnnnncattctgatttggcct	135	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4166462	ttgctgcaaaagtcacccttagcaaaggctgagatcatagacttgacaaggtaaatatgcattaaacttttcagaactttttttcattctgatttggcct	4166561	T

Q	136	ttttgttttatttcccttagtctctcttgttatgaaatgtctgtagatacattacaactctctctg	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4166562	ttttgttttatttcccttggtctctcttgttatgaaatgtctgtagatacattacaactctctctg	4166627	T

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