View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9206_low_4 (Length: 518)
Name: NF9206_low_4
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9206_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Original strand, 513500 - 513987
Alignment:
| Q |
9 |
tttggtgttgcaattgtgagtcgcaggaaactttgtctcagaggagttcaaaataatatggctatgtataggacctgatatggaaacaagatcatgcctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513500 |
tttggtgttgcaattgtgagtcgcaggaaactttgtttcagaggagttcaaaataatatggctatgtataggacctgatatggaaacaagatcatgcctc |
513599 |
T |
|
| Q |
109 |
actcgctgtacatcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngttt |
208 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
513600 |
actcgctgtatatcaacaggaaaaccatcaccattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgttt |
513699 |
T |
|
| Q |
209 |
gggggaatggcgtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513700 |
gggggaatggcgtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaac |
513799 |
T |
|
| Q |
309 |
ctacgatatacaaataaaaaatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagccac |
408 |
Q |
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||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
513800 |
ctaagatattcaaataaaaaatggtaagaatg-----ttgatcagttgcaatatgtgataaattatagaatacaagattaaacccaaaaccattagccac |
513894 |
T |
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| Q |
409 |
aatgcaccactgttcaaataaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaatctatctcatatgacagaag |
502 |
Q |
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| T |
513895 |
aatgcaccactgttcaaataaagtctaaattgtcattaaaaaa-gtataatttctaaattccctaaccttaaaatctatcttatatgacagaag |
513987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Complemental strand, 563637 - 563167
Alignment:
| Q |
9 |
tttggtgttgcaattgtgagtcgcaggaaactttgtctcagaggagttcaaaataatatggctatgtataggacctgatatggaaacaagatcatgcctc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
563637 |
tttggtgttgcaattgtgagtcgcaggaaactttgtctcagaggagttcaaaataatatggctatgtataggacctgatatggaaacaagatcatgcctc |
563538 |
T |
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| Q |
109 |
actcgctgtacatcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaannnnnnngttt |
208 |
Q |
| |
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| T |
563537 |
actcgctgtatatcaacaggaaaaccatcatcattcaataatgtttcctttttatcacttagttgggcagaactttgagtagttctaaatttttttgttt |
563438 |
T |
|
| Q |
209 |
gggggaatggcgtcggagcaggtttgtgagaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaac |
308 |
Q |
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| T |
563437 |
gggggaatggcgtcggagcaggtttgtg------aagctcaacgcaccacgggctgactcgtcttgaaatttgcgagatttgaaattcatcccaattaac |
563344 |
T |
|
| Q |
309 |
ctacga--tatacaaataaaaaatggtaagaatgtaatattgatcagttgcaatatgcgataaattatagaatacaagattaaacccaaaaccattagcc |
406 |
Q |
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||| || ||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
563343 |
ctatgatgtattcaaataaaaaatggtaagaatacaatattgatcatttgcaatatgtgataaattattgaatacaagattaaacccaaaaccattagcc |
563244 |
T |
|
| Q |
407 |
acaatgcaccactgttcaaataaagtctaaattgtcattaaaaaatatataatttctaaattccctaaccttaaaat |
483 |
Q |
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| | ||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
563243 |
agagtgcaccattgttcaaataaagtttaaattgtcattaaaaaatgtataatttataaattccctaaccttaaaat |
563167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 566687 - 566608
Alignment:
| Q |
238 |
gaaataagctcaacccaccacgggttgacacgtcttggaatttgcgagacttgaaattcatcccaattaacctacgatat |
317 |
Q |
| |
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|||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| |
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| T |
566687 |
gaaataagttcaacccaccacataccgactcgtcttggaatttgtgagacttgaaattcatcccagttaacctatgatat |
566608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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