View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9206_low_6 (Length: 384)
Name: NF9206_low_6
Description: NF9206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9206_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 64 - 373
Target Start/End: Complemental strand, 7832415 - 7832128
Alignment:
| Q |
64 |
tgaattatatgtcgaactcatttatcattccccacttttcaggtgatataagaaagaatagtactaggaatttgaatattgctcctcctagcgagagatg |
163 |
Q |
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| T |
7832415 |
tgaattatatgtcgaactcatttatcattccccacttttcaggtgatataagaaagaagagtactaggaatttgaatattgctcctcctagcaagagatg |
7832316 |
T |
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| Q |
164 |
ggtgtgtttttgggttgccgaggagcctttgggaataacctttgtatgttatggagatgcttccccaaaacctccctttgttcggtttgataatgttggg |
263 |
Q |
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| T |
7832315 |
ggtgcgtttttgggttgccgaggagcctttgagaa----------------------tgcttccccaaaacctccctttgttcggattgataatgttggg |
7832238 |
T |
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| Q |
264 |
acaagagagtgtgaagtttgggttcccttttcagagtaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaaga |
363 |
Q |
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| T |
7832237 |
acaagagagtgtgaagtttgggttcccttttcagactaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaaga |
7832138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 7832495 - 7832449
Alignment:
| Q |
19 |
ctacgtttatcgcaacaatgctactttttatcttttgactttatatg |
65 |
Q |
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| T |
7832495 |
ctacgtttatcgcaacaaagctactttttatcttttgactttttatg |
7832449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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