View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9207_low_1 (Length: 780)
Name: NF9207_low_1
Description: NF9207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9207_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 136 - 496
Target Start/End: Complemental strand, 719599 - 719239
Alignment:
| Q |
136 |
atcctcttggtcgattatatattgccagggttagttgatttgtatgatagaattatgtaactataaatttagcttaagtctaaagagtttttgtcaagca |
235 |
Q |
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| T |
719599 |
atcctcttggtcgattatatattgtcaaggttagttgatttgtatgatagaattatgtaactataaatttagcttaagtctaaagagtttttgtcaagca |
719500 |
T |
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| Q |
236 |
ctctctaaatgaaataatcaatttaggagtttcatgtcgnnnnnnngaattaagaacataaataattcactgatataacgaaacaaagaatatatataat |
335 |
Q |
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| T |
719499 |
ctctctaaatgaaataatcaatttaggagtttcatgtcgaaaaaaagaattaagaacataaataattcactgatataacgaaacaaagaatatatataat |
719400 |
T |
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| Q |
336 |
cagctagaatcatacttaagtacacataaacccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactattt |
435 |
Q |
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| T |
719399 |
cagctagaatcatacttaagtacacataatcccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactattt |
719300 |
T |
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| Q |
436 |
gataattaaataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
496 |
Q |
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| T |
719299 |
gataattaaataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
719239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 529 - 765
Target Start/End: Complemental strand, 719206 - 718977
Alignment:
| Q |
529 |
gatactttcaaatagttctcaattaatctgcaaataaattatatcatattcaacttcaatagaggtcaaacatagaccttgtagataatagaagcataca |
628 |
Q |
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| T |
719206 |
gatactttcaaatagttctcaattaatctgcaaataaattatatcatattcaacttcaatagaggtcaaacatagac-------ataatagaagcataca |
719114 |
T |
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| Q |
629 |
cacaattgactatatcatcagtatatattttcttcacgttcatgagaaggaatcaaaagaagtaggaataataaatcgaccactggaataagaaaatatt |
728 |
Q |
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| T |
719113 |
cacaattgactatatcatcagtatatattttcttcacgttcatgagaaggaatcaaaagaagtaggaataataaatcgaccactggaataagaaaatatt |
719014 |
T |
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| Q |
729 |
aactatgttcaactgctcaagactaattcaagtaatt |
765 |
Q |
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| T |
719013 |
aactatgttcaactgctcaagactaattcaagtaatt |
718977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 719680 - 719601
Alignment:
| Q |
14 |
cagagaggaaggagagcgtttgtgttcagatattcataaactaagacacgctaaatgtagtgaaactttacaaactaaag |
93 |
Q |
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| T |
719680 |
cagagaggaaggagagcgtttgtgttcagatattcataaactaagacacgctaaatgtagtgaaactttacaaactaaag |
719601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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