View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9207_low_2 (Length: 438)
Name: NF9207_low_2
Description: NF9207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9207_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 34957594 - 34957999
Alignment:
| Q |
14 |
tttcgtgtttgctgttttttaatacattatgatacaactcagtatactcctcagtggtagctcaggaagaaatattggtctgaacagacgcaagaccgtg |
113 |
Q |
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| T |
34957594 |
tttcgtgtttgctgctttt-aatacattatgatacaactcagtatacttctcagtggtagctcaggaagaaatattggtctggacagacgcacgaccgtg |
34957692 |
T |
|
| Q |
114 |
cggtattttggcacggccgtgtgataacttactataattctggggaaataatgcctaatttcatgcgcacgttcgtgcttatgaatggcacggtcaaatc |
213 |
Q |
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| T |
34957693 |
cggtattttggcacggccgtgcgataacttactgtaattctggggaaataatgcctaatttcatgcgcacggtcgtgcttatgaatggcacggtcaaatc |
34957792 |
T |
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| Q |
214 |
aaatgcttaaagattgtgtgtcaccaaaccatattacattagtgtgttctctgtacatgcaatcacgctagtttgaaacaatggaggaaaagtttggaat |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957793 |
aaatgcttaaagattgcgtgtcaccaaaccatattacattagtgtgttctctgtacatgcaatcacgctagtttgaaacaatggaggaaaagtttggaat |
34957892 |
T |
|
| Q |
314 |
caaaccaacacaagagcactatgcttgcatgattgatatccttggaaatcagggaaactaaatgaagcggtggaacttatgaattccattccatttgaag |
413 |
Q |
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| T |
34957893 |
caaaccaacacaagagcactatgcttgcatgattgatatccttggaaattagggaaactaaatgaagcggtggaacttatgaattccattccatttgaag |
34957992 |
T |
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| Q |
414 |
ctgatgg |
420 |
Q |
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| T |
34957993 |
ctgatgg |
34957999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 285 - 420
Target Start/End: Complemental strand, 50131772 - 50131636
Alignment:
| Q |
285 |
tttgaaacaatggaggaaaagtttggaatcaaaccaacacaagagcactatgcttgcatgattgatatccttggaa-atcagggaaactaaatgaagcgg |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| | |
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| T |
50131772 |
tttgaaacaatggaggaaaagtttggaatcaaaccaacacaagagcaccatgcttgcatgattgatctccttggaagatcagggaaactaaatgaagcag |
50131673 |
T |
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| Q |
384 |
tggaacttatgaattccattccatttgaagctgatgg |
420 |
Q |
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|||| ||| |||||||||||||||||||||| ||||| |
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| T |
50131672 |
tggagcttgtgaattccattccatttgaagccgatgg |
50131636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 50131874 - 50131794
Alignment:
| Q |
210 |
aatcaaatgcttaaagattgtgtgtcaccaaaccatattacattagt--gtgttctctgtacatgcaatcacgctagtttg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||| |
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| T |
50131874 |
aatcaaatgcttaaagattgtgtgtcaccaaaccatattacattagtcagtgttctctgtgcatgtaatcatgctggtttg |
50131794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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