View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9207_low_4 (Length: 214)

Name: NF9207_low_4

Description: NF9207

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9207_low_4

[»] chr5 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 181; E-Value: 6e-98

Query Start/End: Original strand, 17 - 201

Target Start/End: Original strand, 32083683 - 32083867

Alignment:

Q	17	caacctcttccttataacaatcccaccaatactcgcttcggcgttgttcttaacatcgttaacaacactctcagcttcagactcccacccgtaacgatac	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32083683	caacctcttccttataacaatcccaccaatacttgcttcggcgttgttcttaacatcgttaacaacactctcagcttcagactcccacccgtaacgatac	32083782	T

Q	117	tgttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacacca	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32083783	tgttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacacca	32083867	T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 119 - 201

Target Start/End: Complemental strand, 50240541 - 50240459

Alignment:

Q	119	ttgaacaaccttgtttgtaaaaaacggaactgtcatgattctgcgcattttacgccaatgttcgccgtagactgtgaacacca	201	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	50240541	ttgaacaactttgttagtgaaaaatggcaatgtcatgattcttcgcattttgcgccaatgatcaccatagacagtgaaaacca	50240459	T

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