View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9208_low_3 (Length: 555)
Name: NF9208_low_3
Description: NF9208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9208_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 539
Target Start/End: Complemental strand, 5231370 - 5230850
Alignment:
| Q |
19 |
atagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5231370 |
atagactttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttt |
5231271 |
T |
|
| Q |
119 |
tcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaaattttctaattgttaggttgtaactcaaaccatgaaacaattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5231270 |
tcaaatggctccattttggttcatttggaagtcctaatattttgaaaggcgttaaaatttttctaattgttaggttataactcaaaccatgaaacaattt |
5231171 |
T |
|
| Q |
219 |
aaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5231170 |
aaaccttactgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttctaccaaaattagttcctccat |
5231071 |
T |
|
| Q |
319 |
ggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatcagatcttagaagtattcacacaggattaatcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5231070 |
ggtactacaatcaaatataaagatatgagattaaaatcaagtttctagatcatatatttgtataatgagatcttagaagtattcacacaggattaatcaa |
5230971 |
T |
|
| Q |
419 |
atgtaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttgg |
518 |
Q |
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| T |
5230970 |
atttaattaagtcatcatattcatataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttgg |
5230871 |
T |
|
| Q |
519 |
tctatgagatatagcaccacc |
539 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
5230870 |
tctatgagatatagcaccacc |
5230850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 7346105 - 7346067
Alignment:
| Q |
233 |
accatattcatcaataggagcatcataatcatagcttgt |
271 |
Q |
| |
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||||||||||||||| ||||||||||| ||||||||||| |
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| T |
7346105 |
accatattcatcaattggagcatcatagtcatagcttgt |
7346067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 17126716 - 17126621
Alignment:
| Q |
229 |
gcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
324 |
Q |
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|
|||||||||||||||| ||||||||||||||||| || || |||||||| ||||| ||| |||||||| ||||||||||||||||||||||||| |
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| T |
17126716 |
gcataccatattcatcgataggagcatcataatcgtaactcgtggcaatgaaaaggccagaagatgttcttccaaaattagttcctccatggtact |
17126621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 42988695 - 42988787
Alignment:
| Q |
232 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
324 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||||||||||| ||||| ||| |||||| || ||||| ||||||||| ||||||||||| |||| |
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| T |
42988695 |
taccatattcatcaagaggtgcatcatagtcatagcttgtagcaatgaaaggaccaccagctgttctaccaaaatttgttcctccatgatact |
42988787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 523
Target Start/End: Complemental strand, 17126529 - 17126449
Alignment:
| Q |
443 |
ataccatatagtagttaacaaaggagccacgattttgtatgaatctagcaactgagtatgccaagtcttcagttggtctat |
523 |
Q |
| |
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|||||||||||||||||||| | ||||| ||||| |||| |||||| ||||| ||| ||||||||||||| | |||||||| |
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| T |
17126529 |
ataccatatagtagttaacatatgagccgcgattctgtacgaatctggcaaccgagaatgccaagtcttctgctggtctat |
17126449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 17126925 - 17126793
Alignment:
| Q |
23 |
actttacctcaaggtttttatttccaagccatgtgactgtaggatccacagaaatcaaagctggctcacattgttttattgctttatgtaaatttttcaa |
122 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||| ||||| ||||| | ||||||| ||| ||||| ||||||||||||||||||| | | | |
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| T |
17126925 |
actttacctcaaggttttt---tccaggccatgacactgtcggatcaacagacactaaagctgactcgcattgctttattgctttatgtaaatctcttag |
17126829 |
T |
|
| Q |
123 |
atggctccattttggttcatttggaagtcctaatat |
158 |
Q |
| |
|
||| | ||||||||||||| || ||||||| |||| |
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| T |
17126828 |
atgcccccattttggttcacttataagtcctgatat |
17126793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 5452968 - 5452874
Alignment:
| Q |
230 |
cataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtact |
324 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||| |||||||| ||||| ||||| |||| |
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| T |
5452968 |
cataccgtattcatcaagaggtgcatcataatcatagcttgtggcaataaaaggaccaccagcggttcttccaaaatttgttccaccatgatact |
5452874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 325
Target Start/End: Complemental strand, 52647440 - 52647347
Alignment:
| Q |
232 |
taccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
325 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | ||| || |||| | || || ||| |||||||| ||||||||||||||||| |
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|
| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtacta |
52647347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 325
Target Start/End: Original strand, 22014418 - 22014515
Alignment:
| Q |
228 |
tgcataccatattcatcaataggagcatcataatcatagcttgtggcaataaaaagaccactagatgttcgaccaaaattagttcctccatggtacta |
325 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| || || | ||| ||| | |||| | |||||||||||| ||||| |||||||||||||| |
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|
| T |
22014418 |
tgcataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtacta |
22014515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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