View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9208_low_8 (Length: 348)
Name: NF9208_low_8
Description: NF9208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9208_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5230873 - 5230583
Alignment:
| Q |
1 |
tggtctatgagatatagcaccaccgaaatcagtgtacctatagaataggtaagataaaaattaaacatatgatcccaaatgaaatatttatagctttaaa |
100 |
Q |
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| T |
5230873 |
tggtctatgagatatagcaccaccgaaatcagtgtacctacagaataggtaacataaaaattaaacatatgatcccaaatgaaatatttatagctttaaa |
5230774 |
T |
|
| Q |
101 |
ttaatggtagcatttgaatgagcatgaattaccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagta |
200 |
Q |
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| T |
5230773 |
ttaatggtagcatttgaatgagcatgacttaccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagta |
5230674 |
T |
|
| Q |
201 |
atatccattgcaagtgtcaatctacaacatagttcagtaaatatatatcaaacagagaaagatgaaagtaagaataaattaatattagttt |
291 |
Q |
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| T |
5230673 |
atatccattgcaagtgtcaatctacaacatagttcagtaaatatatatcaaacagagaaagatgaaagtaagaataaattaatattagttt |
5230583 |
T |
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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 17126333 - 17126237
Alignment:
| Q |
130 |
taccagccagaccaattctcagtccacattttgggtttaaagttctcgttgggagtgaaattttcacagtaatatccattgcaagtgtcaatctaca |
226 |
Q |
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|||||||||| |||||| || ||||||||||| ||||| |||||| |||||||| ||| |||||||||||||||||||| || || |||||||||| |
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| T |
17126333 |
taccagccagtccaattttctgtccacatttttggtttgtagttcttgttgggagagaagttttcacagtaatatccattacaggtatcaatctaca |
17126237 |
T |
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