View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9209_low_1 (Length: 988)

Name: NF9209_low_1
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9209_low_1
NF9209_low_1
[»] chr8 (6 HSPs)
chr8 (330-973)||(42990589-42991232)
chr8 (11-282)||(42991230-42991501)
chr8 (28-221)||(35017979-35018172)
chr8 (716-910)||(35016245-35016439)
chr8 (330-537)||(35017692-35017899)
chr8 (248-303)||(26499591-26499646)
[»] chr3 (6 HSPs)
chr3 (1-221)||(38213994-38214214)
chr3 (1-221)||(38218213-38218433)
chr3 (708-969)||(38218909-38219170)
chr3 (327-539)||(38214294-38214506)
chr3 (327-539)||(38218513-38218725)
chr3 (712-969)||(38214692-38214949)
[»] chr4 (12 HSPs)
chr4 (84-152)||(53495383-53495451)
chr4 (66-152)||(53488672-53488758)
chr4 (58-160)||(53492989-53493091)
chr4 (387-505)||(53494981-53495099)
chr4 (58-155)||(53499286-53499383)
chr4 (390-505)||(53498939-53499054)
chr4 (85-155)||(53502408-53502478)
chr4 (52-164)||(52591022-52591134)
chr4 (390-505)||(53492634-53492749)
chr4 (390-481)||(53502101-53502192)
chr4 (366-510)||(52590708-52590852)
chr4 (712-774)||(53494776-53494838)
[»] chr7 (5 HSPs)
chr7 (390-505)||(37188574-37188689)
chr7 (44-165)||(37188910-37189031)
chr7 (52-116)||(32715057-32715121)
chr7 (52-116)||(32709835-32709899)
chr7 (712-912)||(37188272-37188472)
[»] chr6 (4 HSPs)
chr6 (55-146)||(10411374-10411465)
chr6 (247-302)||(14340939-14340994)
chr6 (55-116)||(10379765-10379826)
chr6 (247-301)||(3181207-3181261)
[»] chr2 (6 HSPs)
chr2 (52-160)||(16942648-16942756)
chr2 (52-160)||(17013313-17013421)
chr2 (369-469)||(16942166-16942266)
chr2 (369-469)||(17012831-17012931)
chr2 (247-292)||(15377448-15377493)
chr2 (247-300)||(39236628-39236681)


Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 330 - 973
Target Start/End: Complemental strand, 42991232 - 42990589
Alignment:
Q  330 acttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgc 429  Q
    |||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42991232 acttacatgatacgtcggggcttccagatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctgtttcctttgc 42991133  T
Q  430 cttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaa 529  Q
    |||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  42991132 cttgagaaaacacgtttgtgtggagaatgtaaggattaccgctaacatttcccaagaactcaaaatcaatttcgtcgtgagttggcccttgtgatgacaa 42991033  T
Q  530 ctgcaccataagcaaaatgctagtaaaaacttttgatttcatgaaga-gctatgtatgttaattaaagttgctttcgaaaaagaaacaacgaaggaatat 628  Q
    |||||||||||| |||||||| |||||| ||||  | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42991032 ctgcaccataaggaaaatgctcgtaaaagctttcaacttcatgaagaagctatgtatgttaattaaagttgcttttgaaaaagaaacaacgaaggaatat 42990933  T
Q  629 aatatataatgtgaagaagacaagaaaagaatcaaattgtatgagtttgatttgaatgaatttagatggaaaaaagtactacgtacatagtaagcagtga 728  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42990932 aatatataatgtgaagaaggcaagaaaagaatcaaattgtatgagtttgatttgaatgaatt-agatggaaaaaagtactacgtacatagtaagcagtga 42990834  T
Q  729 cggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagccggagactttgtc 828  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42990833 cggttccagcagagtttccagcaaccagtttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagccggagactttgtc 42990734  T
Q  829 gagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaatttgcacaacatgtagct 928  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42990733 gagagaaagtgaaagaagctgaccaccgttgaatgtcttagcacggtgatcgccccatgttagatcaaaatcttggtagaaatttgcacaacatgtagct 42990634  T
Q  929 atcaaggagctaactatcatagctccaatcagcatattgttcatg 973  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  42990633 atcaaggagctaactatcatagctccaatcagcatacagttcatg 42990589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 42991501 - 42991230
Alignment:
Q  11 aggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42991501 aggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcttcagc 42991402  T
Q  111 gttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggatgttgtcaacc 210  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  42991401 gttccaaagacttgaatatattctcatcggttggttctttgggaaaggaatactaatagattcagcattcttgaagatccttattgggatgttgtcaacc 42991302  T
Q  211 aagaatctgcatttatatatcaacatgttagtttagttatatgataagtgtttgtgttataagcacttaact 282  Q
    ||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||    
T  42991301 aagaatctgcagttatatatcaacatgttaatttggttataagataagtgtttgtgttataagcacttaact 42991230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 35018172 - 35017979
Alignment:
Q  28 ttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaat 127  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || ||||    
T  35018172 ttgaaattacggtagtatgctgtaaagggtgctttggaccaatcagttttcaccaatccacctcttgtggcccaatcatcagcattccacaggctggaat 35018073  T
Q  128 atattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggatgttgtcaaccaagaatctgca 221  Q
    | ||||||||||||||||||||||| ||||||| |||||| |||||| |||||||||| | ||||||||| ||||| |||||||||||||||||    
T  35018072 agattctcattggttggttctttggaaaaggaacaccaatagattcaacattcttgaatacccttattggcatgttatcaaccaagaatctgca 35017979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 716 - 910
Target Start/End: Complemental strand, 35016439 - 35016245
Alignment:
Q  716 tagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagc 815  Q
    |||||||||||||| || ||||||||||| |||||||| |  || || |||||||||||||| || |||| ||||||| |||| || | |||||||||||    
T  35016439 tagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagccagagc 35016340  T
Q  816 cggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaa 910  Q
    | ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  35016339 cagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagcacggttatcaccccatgttagatcaaagtcttggtagaaa 35016245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 330 - 537
Target Start/End: Complemental strand, 35017899 - 35017692
Alignment:
Q  330 acttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgc 429  Q
    |||||||| || |||||||| ||||||||||| |||||||||||||||||  | ||||| |||||||| ||||||||||||||||||||||| ||||| |    
T  35017899 acttacatgatgtgttggggtttccaaatgatggagtaagtgtggaagtttctagtggggtcaaaccataggtagaattgttgttctctattacctttac 35017800  T
Q  430 cttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaa 529  Q
    ||||||  || | ||| ||||||||||| ||||||||||| ||    ||||||||||||||||||||||| ||||| || ||||| ||||| || ||||     
T  35017799 cttgagtgaagatgtttgtgtgaagaatataagggtcaccacttgtgtttcccaagaactcaaaatcaatctcatcatgggttggtccttgggatgacag 35017700  T
Q  530 ctgcacca 537  Q
    ||| ||||    
T  35017699 ctgtacca 35017692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 26499646 - 26499591
Alignment:
Q  248 tatatgataagtgtttgtgttataagcacttaactgagttgtttattcaaacatga 303  Q
    ||||||||||| | || |||| ||||||||||| | ||||||||||||||||||||    
T  26499646 tatatgataagcgcttatgttttaagcacttaattaagttgtttattcaaacatga 26499591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-99; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38213994 - 38214214
Alignment:
Q  1 gaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagccc 100  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38213994 gaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagccc 38214093  T
Q  101 aatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggat 200  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |    
T  38214094 aatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattggggt 38214193  T
Q  201 gttgtcaaccaagaatctgca 221  Q
    |||||||||||| ||||||||    
T  38214194 gttgtcaaccaaaaatctgca 38214214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38218213 - 38218433
Alignment:
Q  1 gaagagacagaggataattcagtagctttgaaattgcggtagtaagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagccc 100  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38218213 gaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaagggtgctttggaccaatcagttttcaccaaaccacctcttgtagccc 38218312  T
Q  101 aatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaaggaataccaatcgattcagcattcttgaagatccttattgggat 200  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |    
T  38218313 aatcatcagcattccagagacttgaatagattctcattggttggttctttgggaatggaataccaattgattcagcattcttgaagatccttattggggt 38218412  T
Q  201 gttgtcaaccaagaatctgca 221  Q
    |||||||||||| ||||||||    
T  38218413 gttgtcaaccaaaaatctgca 38218433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 708 - 969
Target Start/End: Original strand, 38218909 - 38219170
Alignment:
Q  708 tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaa 807  Q
    ||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| |||||    
T  38218909 tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaa 38219008  T
Q  808 gccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtag 907  Q
    ||||||||| ||   ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| |    
T  38219009 gccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttg 38219108  T
Q  908 aaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatattgtt 969  Q
    || || ||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||||    
T  38219109 aagttagcagaacatgtagctaccaaggagctaattatcataactccaatcagcatattgtt 38219170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 327 - 539
Target Start/End: Original strand, 38214294 - 38214506
Alignment:
Q  327 attacttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctt 426  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||    
T  38214294 attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt 38214393  T
Q  427 tgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacga 526  Q
    ||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||    
T  38214394 tgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga 38214493  T
Q  527 caactgcaccata 539  Q
    |||||||||||||    
T  38214494 caactgcaccata 38214506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 327 - 539
Target Start/End: Original strand, 38218513 - 38218725
Alignment:
Q  327 attacttacataatatgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctt 426  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||    
T  38218513 attacttacataatgtgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctt 38218612  T
Q  427 tgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacga 526  Q
    ||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| ||    
T  38218613 tgccttgagaaaacacgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatga 38218712  T
Q  527 caactgcaccata 539  Q
    |||||||||||||    
T  38218713 caactgcaccata 38218725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 712 - 969
Target Start/End: Original strand, 38214692 - 38214949
Alignment:
Q  712 tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca 811  Q
    ||||||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  38214692 tacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagcca 38214791  T
Q  812 gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat 911  Q
    ||||| ||   ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| |    
T  38214792 gagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagt 38214891  T
Q  912 ttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatattgtt 969  Q
    | ||| |||||||||||| ||||||||||| ||||||  |||||||||||||| ||||    
T  38214892 tagcagaacatgtagctaccaaggagctaattatcatgactccaatcagcatactgtt 38214949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 53495451 - 53495383
Alignment:
Q  84 accacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 152  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||    
T  53495451 accacctcttgttgcccaatcatcagcattccatagacttgaatatatcctcattggttgattctttgg 53495383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 53488672 - 53488758
Alignment:
Q  66 ccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgg 152  Q
    |||||| |||||||| | |||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||| || ||||||||    
T  53488672 ccaatctgttttcacaagaccacctcttgttgcccaatcatcggcattccatagacttgaatataatctcattggctgcttctttgg 53488758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 58 - 160
Target Start/End: Complemental strand, 53493091 - 53492989
Alignment:
Q  58 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaaag 157  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| |    
T  53493091 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaatg 53492992  T
Q  158 gaa 160  Q
    |||    
T  53492991 gaa 53492989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 387 - 505
Target Start/End: Complemental strand, 53495099 - 53494981
Alignment:
Q  387 ggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaaga 486  Q
    ||||||||||| || | |||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||| || || || || ||||| || ||||    
T  53495099 ggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccctaaga 53495000  T
Q  487 actcaaaatcaatttcatc 505  Q
    | ||||| ||||| |||||    
T  53494999 attcaaagtcaatctcatc 53494981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 53499383 - 53499286
Alignment:
Q  58 gctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 155  Q
    |||||||||||||| || || || |  || |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| || |||||    
T  53499383 gctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcattccagagacttgagtatatcctcattggttggtttttggggaa 53499286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 390 - 505
Target Start/End: Complemental strand, 53499054 - 53498939
Alignment:
Q  390 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact 489  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||   |||||| || |||||||| |||||||| ||||| || | |||||||||||| |    
T  53499054 tcaaaccaaaggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaatt 53498955  T
Q  490 caaaatcaatttcatc 505  Q
    |||| ||||| |||||    
T  53498954 caaagtcaatctcatc 53498939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 53502478 - 53502408
Alignment:
Q  85 ccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttgggaa 155  Q
    ||||||||||| ||||| | ||| || ||||| | ||||||||||||||||||||||||||||||||||||    
T  53502478 ccacctcttgttgcccagttatctgcattccacaaacttgaatatattctcattggttggttctttgggaa 53502408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 52591134 - 52591022
Alignment:
Q  52 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 151  Q
    ||||| |||| |||||||||||||||| | | ||| || ||||| ||||||| ||| || | ||| |||||||||||||| ||||||| |||| | || |    
T  52591134 aatggggcttgggaccaatcagttttcgctagacctccccttgtggcccaattatctgcatcccaaagacttgaatatatactcattgcttggcttttag 52591035  T
Q  152 ggaaaggaatacc 164  Q
    | |||||||||||    
T  52591034 gaaaaggaatacc 52591022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 390 - 505
Target Start/End: Complemental strand, 53492749 - 53492634
Alignment:
Q  390 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact 489  Q
    |||||||| ||||| | |||||| ||||| |  |||||||||||   |||||| || || ||||| |||||||| ||||| || | |||||||||||| |    
T  53492749 tcaaaccaaaggtaaatttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaatt 53492650  T
Q  490 caaaatcaatttcatc 505  Q
    |||| |||||||||||    
T  53492649 caaagtcaatttcatc 53492634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 53502192 - 53502101
Alignment:
Q  390 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcc 481  Q
    |||||||| || |||||||||||||| || |||||||||||||||   || || ||||||||||| ||||| || ||||| || ||||||||    
T  53502192 tcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcc 53502101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 366 - 510
Target Start/End: Complemental strand, 52590852 - 52590708
Alignment:
Q  366 taagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggt 465  Q
    |||||||| |||| ||||||||| || ||||| |  ||||||||||||||| |||||||||| ||||| | | | | ||| || |||| ||| ||||| |    
T  52590852 taagtgtgaaagtccttggtggggtcgaaccacaaatagaattgttgttctttatttcctttcccttgtgcataaatgtttgtatgaacaatataaggat 52590753  T
Q  466 caccgctaacatttcccaagaactcaaaatcaatttcatcgtgag 510  Q
    |||| || |  || ||||| || |||||||| |||||||| ||||    
T  52590752 caccacttaagttacccaaaaattcaaaatctatttcatcatgag 52590708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 712 - 774
Target Start/End: Complemental strand, 53494838 - 53494776
Alignment:
Q  712 tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat 774  Q
    |||||||||||||||||| ||||| |||||||||||||  || |  ||||| |||||||||||    
T  53494838 tacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaat 53494776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 390 - 505
Target Start/End: Complemental strand, 37188689 - 37188574
Alignment:
Q  390 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact 489  Q
    |||||||| |||||||||||||| ||||| || ||||| |||||   |||||| || |||||||||||||| |||||||| || |  ||||||||||| |    
T  37188689 tcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaatt 37188590  T
Q  490 caaaatcaatttcatc 505  Q
    |||| |||||||||||    
T  37188589 caaagtcaatttcatc 37188574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 37189031 - 37188910
Alignment:
Q  44 aagctgtaaatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttg 143  Q
    |||| ||||| || || ||||||||||| || || || |  |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||    
T  37189031 aagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcattccaaagactagaatagattctcattggttg 37188932  T
Q  144 gttctttgggaaaggaatacca 165  Q
    | | || ||||| |||| ||||    
T  37188931 gcttttggggaatggaacacca 37188910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 32715121 - 32715057
Alignment:
Q  52 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 116  Q
    ||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||| || |||||    
T  32715121 aatggtgcttttgaccaatctgttttctccaaaccacctcttgtggcccaatcatctgcattcca 32715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 32709899 - 32709835
Alignment:
Q  52 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 116  Q
    |||||||||||||||||||| |||||| | || ||||||||||| ||||||||||| || |||||    
T  32709899 aatggtgctttggaccaatctgttttctctaatccacctcttgttgcccaatcatctgcattcca 32709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 712 - 912
Target Start/End: Complemental strand, 37188472 - 37188272
Alignment:
Q  712 tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca 811  Q
    |||||| || ||||||||||| ||||||||||| |||| ||| | ||| || |||||||||||| | || || | ||| || || ||||| || || |||    
T  37188472 tacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaacca 37188373  T
Q  812 gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat 911  Q
    ||||| |||  |||||| ||||| |  | |||||| || |||  ||||| ||| ||||||||   ||| |||||||||| |||||| ||||| || ||||    
T  37188372 gagccagaggatttgtcaagagacaaagtaagaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagtcttgataaaaat 37188273  T
Q  912 t 912  Q
    |    
T  37188272 t 37188272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 10411465 - 10411374
Alignment:
Q  55 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggtt 146  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| ||||| |  ||   ||||||| |||||||||||||    
T  10411465 ggtgctttggaccaatctgttttctccaaaccaccccttgtagcccaatcatcagcattccataagctattatatattttcattggttggtt 10411374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 14340939 - 14340994
Alignment:
Q  247 ttatatgataagtgtttgtgttataagcacttaactgagttgtttattcaaacatg 302  Q
    ||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||    
T  14340939 ttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaacatg 14340994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 10379765 - 10379826
Alignment:
Q  55 ggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttcca 116  Q
    ||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||| |||||    
T  10379765 ggtgctttggaccaatctgttttctctaaaccaccccttgtggcccaatcatcagcattcca 10379826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 3181207 - 3181261
Alignment:
Q  247 ttatatgataagtgtttgtgttataagcacttaactgagttgtttattcaaacat 301  Q
    ||||||||||| |||||||| ||||||| ||||| | ||||||||||||||||||    
T  3181207 ttatatgataaatgtttgtgctataagcgcttaattaagttgtttattcaaacat 3181261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 16942756 - 16942648
Alignment:
Q  52 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 151  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  16942756 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 16942657  T
Q  152 ggaaaggaa 160  Q
    | |||||||    
T  16942656 gaaaaggaa 16942648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 17013421 - 17013313
Alignment:
Q  52 aatggtgctttggaccaatcagttttcaccaaaccacctcttgtagcccaatcatcagcgttccagagacttgaatatattctcattggttggttctttg 151  Q
    ||||| || |||| |||||| |||||||| |  |||||||| || ||||||| ||| || ||||| |||||||||||||| ||||| | |||||||||||    
T  17013421 aatggagcattggtccaatctgttttcacaatcccacctctagtggcccaattatctgcattccaaagacttgaatatatcctcatggcttggttctttg 17013322  T
Q  152 ggaaaggaa 160  Q
    | |||||||    
T  17013321 gaaaaggaa 17013313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 369 - 469
Target Start/End: Complemental strand, 16942266 - 16942166
Alignment:
Q  369 gtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcac 468  Q
    |||||||||| |||||| || |||||||| |  ||||||||||| |||||||| ||||| ||||| |  || ||||| || |||||||| ||||| ||||    
T  16942266 gtgtggaagtccttggtagggtcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcac 16942167  T
Q  469 c 469  Q
    |    
T  16942166 c 16942166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 369 - 469
Target Start/End: Complemental strand, 17012931 - 17012831
Alignment:
Q  369 gtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcac 468  Q
    |||||||||| |||||| || |||||||| |  ||||||||||| |||||||| ||||| ||||| |  || ||||| || |||||||| ||||| ||||    
T  17012931 gtgtggaagtccttggtagggtcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcac 17012832  T
Q  469 c 469  Q
    |    
T  17012831 c 17012831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 15377493 - 15377448
Alignment:
Q  247 ttatatgataagtgtttgtgttataagcacttaactgagttgttta 292  Q
    ||||||||||||||| | |||||||||||||||| | |||||||||    
T  15377493 ttatatgataagtgtgtatgttataagcacttaattcagttgttta 15377448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 39236628 - 39236681
Alignment:
Q  247 ttatatgataagtgtttgtgttataagcacttaactgagttgtttattcaaaca 300  Q
    ||||||||||||||||| ||| |||||||||||| | || |||||| |||||||    
T  39236628 ttatatgataagtgtttatgtcataagcacttaattaagatgtttagtcaaaca 39236681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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