View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9209_low_10 (Length: 248)
Name: NF9209_low_10
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9209_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 27684129 - 27683964
Alignment:
| Q |
1 |
atatcttatcattctgtttctgtgatcattaatcaatttcatcgcaaacaaacaa-aaatacgaaacagatataagtgaaattcatcacccatattctgc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27684129 |
atatcttatcattctgtttctgtgatcattaatcaatttcatcgcaaacaaacaagaaatacgaaacagatataagtgaaattcatcacccatattctgc |
27684030 |
T |
|
| Q |
100 |
tactaaaaaat------tgaattttctgcacaaaatatgccaataatatatttcaatccactcaac |
159 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27684029 |
tactaaaaaattgaaattgaattttctgcacaaaatatgtcaataatatatttcaatccactcaac |
27683964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University