View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9209_low_12 (Length: 242)

Name: NF9209_low_12
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9209_low_12
NF9209_low_12
[»] chr5 (9 HSPs)
chr5 (60-191)||(3647467-3647602)
chr5 (1-49)||(10592043-10592091)
chr5 (1-48)||(31113450-31113497)
chr5 (3-45)||(30784967-30785009)
chr5 (1-38)||(5123486-5123523)
chr5 (2-38)||(22187986-22188022)
chr5 (3-49)||(373741-373787)
chr5 (1-37)||(12682751-12682787)
chr5 (1-49)||(25983781-25983829)
[»] chr8 (9 HSPs)
chr8 (1-49)||(4125001-4125049)
chr8 (1-49)||(2744049-2744097)
chr8 (1-49)||(39086868-39086916)
chr8 (1-38)||(7839241-7839278)
chr8 (4-48)||(19715703-19715747)
chr8 (5-49)||(13468722-13468766)
chr8 (1-31)||(30936120-30936150)
chr8 (1-34)||(12958077-12958110)
chr8 (1-49)||(8521814-8521861)
[»] chr7 (13 HSPs)
chr7 (1-49)||(31492219-31492267)
chr7 (2-49)||(29059922-29059969)
chr7 (1-45)||(37339714-37339758)
chr7 (1-38)||(28665206-28665243)
chr7 (1-45)||(21747021-21747065)
chr7 (1-45)||(42741790-42741834)
chr7 (1-49)||(45778980-45779028)
chr7 (1-38)||(35707962-35707999)
chr7 (1-46)||(36821060-36821105)
chr7 (2-49)||(19477229-19477274)
chr7 (1-37)||(20207613-20207649)
chr7 (2-38)||(28537503-28537539)
chr7 (1-45)||(31776534-31776578)
[»] chr4 (11 HSPs)
chr4 (1-45)||(9012386-9012430)
chr4 (1-49)||(31307043-31307091)
chr4 (1-45)||(38766205-38766249)
chr4 (2-49)||(33529374-33529421)
chr4 (1-47)||(51626285-51626331)
chr4 (8-45)||(37241357-37241394)
chr4 (1-49)||(35972459-35972507)
chr4 (1-38)||(14854721-14854758)
chr4 (6-38)||(15133496-15133528)
chr4 (3-48)||(18841603-18841649)
chr4 (7-49)||(46016271-46016313)
[»] chr3 (12 HSPs)
chr3 (1-49)||(8757460-8757508)
chr3 (1-49)||(30995942-30995990)
chr3 (1-49)||(40318426-40318474)
chr3 (1-45)||(55123213-55123257)
chr3 (3-49)||(48204288-48204334)
chr3 (2-47)||(38331245-38331290)
chr3 (2-49)||(1642723-1642770)
chr3 (3-49)||(25224817-25224863)
chr3 (1-38)||(20861364-20861401)
chr3 (1-36)||(27763837-27763872)
chr3 (5-36)||(44941255-44941286)
chr3 (5-49)||(40294732-40294776)
[»] chr1 (10 HSPs)
chr1 (1-49)||(16756198-16756246)
chr1 (1-48)||(18428120-18428167)
chr1 (1-39)||(42297429-42297467)
chr1 (1-49)||(46864207-46864255)
chr1 (1-47)||(15642571-15642617)
chr1 (1-38)||(7242795-7242832)
chr1 (1-38)||(28724788-28724825)
chr1 (1-49)||(36806727-36806775)
chr1 (1-38)||(22022236-22022273)
chr1 (1-49)||(49071693-49071741)
[»] chr6 (5 HSPs)
chr6 (3-49)||(21910322-21910368)
chr6 (1-38)||(28099359-28099396)
chr6 (2-38)||(12836885-12836921)
chr6 (1-36)||(9536883-9536918)
chr6 (2-38)||(12411265-12411301)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-49)||(26447-26495)
[»] scaffold0013 (1 HSPs)
scaffold0013 (4-48)||(29130-29174)
[»] chr2 (11 HSPs)
chr2 (1-49)||(37179978-37180026)
chr2 (1-47)||(42745095-42745141)
chr2 (4-49)||(5394515-5394560)
chr2 (1-38)||(17981613-17981650)
chr2 (1-46)||(17655777-17655824)
chr2 (1-45)||(25423860-25423904)
chr2 (1-49)||(37092172-37092220)
chr2 (1-47)||(31579208-31579254)
chr2 (1-38)||(1682138-1682175)
chr2 (1-37)||(14551590-14551626)
chr2 (21-49)||(33757104-33757132)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-38)||(27213-27250)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 3647602 - 3647467
Alignment:
Q  60 aaatactcctacatcaattttaatagatttatttgtctttta----taaaaggaaaaggggaagtatattgttgacttttgatgaaataaaaatgtgatg 155  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3647602 aaatactcctacatcaattttaatagatttatttgtcttttaattataaaaggaaaaggggaagtatattgttgacttttgatgaaataaaaatgtgatg 3647503  T
Q  156 gtgataaactcgaaacaacgttaataaatcctggtc 191  Q
    ||||||||||||||||||||||||||||||||||||    
T  3647502 gtgataaactcgaaacaacgttaataaatcctggtc 3647467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10592043 - 10592091
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  10592043 cgagggattagtctctgcagttgcgcgcggaggatacccgatttacacc 10592091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31113450 - 31113497
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 48  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  31113450 cgagggattagtctccgcagttgcgcgcgaaggatacccgatttacac 31113497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 30785009 - 30784967
Alignment:
Q  3 agggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  30785009 agggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5123523 - 5123486
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5123523 cgagggattagtctccgcagttgcgcgcggaggatacc 5123486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 22188022 - 22187986
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  22188022 gagggattagtctccgcagttgcgcgcggaggatacc 22187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 373787 - 373741
Alignment:
Q  3 agggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||| ||||||||||||||| |||||||||||  |||||||||    
T  373787 agggattaatctccgcagttgcgcacggaggatacccaatttacacc 373741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12682751 - 12682787
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatac 37  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  12682751 cgaggaattagtcttcgcagttgcgcgcggaggatac 12682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 25983781 - 25983829
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||| ||||||||||||||||||| | ||||||||||| | ||||||||    
T  25983781 cgagtgattagtctccgcagttgcacacggaggatacccggtttacacc 25983829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4125049 - 4125001
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4125049 cgagggattagtctccgcagttgcgcgcggaggatacccgatttacacc 4125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2744049 - 2744097
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  2744049 cgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 2744097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39086868 - 39086916
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39086868 cgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7839278 - 7839241
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7839278 cgagggattagtctccgcagttgcgcgcggaggatacc 7839241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 19715747 - 19715703
Alignment:
Q  4 gggattagtctccgcagttgcgcgcggaggatacctgatttacac 48  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||    
T  19715747 gggattagtctccgcagttgcgcgcggagaatacctggtttacac 19715703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 13468766 - 13468722
Alignment:
Q  5 ggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  13468766 ggattagtctccgcagttgcgcacggaggatacccggtttacacc 13468722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30936120 - 30936150
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcgga 31  Q
    |||||||||||||||||||||||||||||||    
T  30936120 cgagggattagtctccgcagttgcgcgcgga 30936150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12958110 - 12958077
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggagga 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  12958110 cgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8521814 - 8521861
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||| ||| |||||||||||||| |||||| ||||||||||    
T  8521814 cgagggattagtatcc-cagttgcgcgcggaagatacccgatttacacc 8521861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31492219 - 31492267
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31492219 cgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31492267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 29059922 - 29059969
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  29059922 gagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 29059969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37339758 - 37339714
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  37339758 cgagggattagtctccgcagttgcgcacggaggatacccgattta 37339714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28665206 - 28665243
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28665206 cgagggattagtctccgcagttgcacgcggaggatacc 28665243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21747065 - 21747021
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||    
T  21747065 cgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42741834 - 42741790
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||    
T  42741834 cgagggattaatctctgcagttgcgcgcggaggatacccgattta 42741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45778980 - 45779028
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||   |||||||||||| ||||||||    
T  45778980 cgagggattagtctccgcagttgcgaatggaggatacctggtttacacc 45779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35707962 - 35707999
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  35707962 cgagggattagtctctgcagttgcgcgtggaggatacc 35707999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36821105 - 36821060
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttac 46  Q
    ||||||||||||||| |||||||||||| |||||||| || |||||    
T  36821105 cgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 19477274 - 19477229
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||||||||||  ||||||||||| ||| ||||||||    
T  19477274 gagggattagtctccgcagttg--cgcggaggatagctggtttacacc 19477229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20207613 - 20207649
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatac 37  Q
    |||||||||||||||||||||||||| | ||||||||    
T  20207613 cgagggattagtctccgcagttgcgcacagaggatac 20207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 28537503 - 28537539
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  28537503 gagggattagtctccgcagttgcacgcgaaggatacc 28537539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31776534 - 31776578
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||| ||| |||||||||| |||||||||||||| ||||    
T  31776534 cgagggattaatcttcgcagttgcgggcggaggatacctggttta 31776578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9012386 - 9012430
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  9012386 cgagggattagtctccgcagttgcgcgcggaggatacccgattta 9012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31307091 - 31307043
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31307091 cgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 31307043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38766205 - 38766249
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  38766205 cgagggattagtctccgcagttgcgcgcggaggatacccgattta 38766249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 33529374 - 33529421
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  33529374 gagggattagtctccgcagttgcgcacggaggatacttgatttacacc 33529421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51626331 - 51626285
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 47  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  51626331 cgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 37241394 - 37241357
Alignment:
Q  8 ttagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37241394 ttagtctccgcagttgcgcgcggaggatacctgattta 37241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35972459 - 35972507
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  35972459 cgagggattagtctccgcagttgcgtgcggaggatacctagtttacacc 35972507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14854721 - 14854758
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  14854721 cgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 15133496 - 15133528
Alignment:
Q  6 gattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||||||||||||||||||||||||||||||||    
T  15133496 gattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 18841603 - 18841649
Alignment:
Q  3 agggattagtctccgca-gttgcgcgcggaggatacctgatttacac 48  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  18841603 agggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 46016271 - 46016313
Alignment:
Q  7 attagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||    
T  46016271 attagtctccgtagttgcgcgtggaggatacccgatttacacc 46016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 8757460 - 8757508
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  8757460 cgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 8757508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30995990 - 30995942
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  30995990 cgagggattagtctccgcagttgcgcgcggaggatatctggtttacacc 30995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 40318474 - 40318426
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  40318474 cgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 55123213 - 55123257
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  55123213 cgagggattagtcttcgcagttgcgcgcggaggatacctgattta 55123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 48204334 - 48204288
Alignment:
Q  3 agggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  48204334 agggattagtttccgcagttgcgcgcggaggatacccgatttacacc 48204288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 38331245 - 38331290
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacctgatttaca 47  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  38331245 gagggattagtctccgcagttgcacgcggaggatacccgatttaca 38331290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 1642723 - 1642770
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||| ||||||||||||||||||||||| | ||||||||||    
T  1642723 gagggattagtttccgcagttgcgcgcggaggatatccgatttacacc 1642770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 25224817 - 25224863
Alignment:
Q  3 agggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||| ||||||||||||| | ||||||||    
T  25224817 agggattagtctccgcagttgcacgcggaggatacccggtttacacc 25224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20861364 - 20861401
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20861364 cgagggattagtctccgcagttgtgcgcggaggatacc 20861401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27763837 - 27763872
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggata 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  27763837 cgagggattagtctccgcagttgcgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 44941286 - 44941255
Alignment:
Q  5 ggattagtctccgcagttgcgcgcggaggata 36  Q
    ||||||||||||||||||||||||||||||||    
T  44941286 ggattagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 40294732 - 40294776
Alignment:
Q  5 ggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||| |  |||||||| ||||||||||    
T  40294732 ggattagtctccgcagttgcgcacaaaggatacccgatttacacc 40294776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16756198 - 16756246
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  16756198 cgagggattagtctccgcagttgcgcgcggaggatactcgatttacacc 16756246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18428167 - 18428120
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 48  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  18428167 cgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42297467 - 42297429
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacct 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42297467 cgagggattagtctccgcagttgcgcgcggaggatacct 42297429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46864207 - 46864255
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  46864207 cgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 15642571 - 15642617
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 47  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  15642571 cgagagattattctccgcagttgcgcgcggaggatacccgatttaca 15642617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7242832 - 7242795
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7242832 cgagggattagtctccgcagttgcgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28724788 - 28724825
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  28724788 cgagggattagtctccgcaattgcgcgcggaggatacc 28724825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36806727 - 36806775
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||| |||||||| ||||||||||||| | ||||||||    
T  36806727 cgagggattagtctctgcagttgcacgcggaggatacccggtttacacc 36806775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22022236 - 22022273
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  22022236 cgagggattagtctccgcagttgcacgtggaggatacc 22022273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49071693 - 49071741
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||| |||||||||||||||||||| ||||| |||| | ||||||||||    
T  49071693 cgagagattagtctccgcagttgcgtgcggaagatatccgatttacacc 49071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 21910322 - 21910368
Alignment:
Q  3 agggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21910322 agggattagtctccgcagttgcacgcggaggatacctggtttacacc 21910368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28099359 - 28099396
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28099359 cgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 12836921 - 12836885
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12836921 gagggattagtctccccagttgcgcgcggaggatacc 12836885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9536883 - 9536918
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggata 36  Q
    |||||||||||||||||||||||||| |||||||||    
T  9536883 cgagggattagtctccgcagttgcgctcggaggata 9536918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 12411265 - 12411301
Alignment:
Q  2 gagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  12411265 gagggattagtctccacagttgcgcgcgggggatacc 12411301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26447 - 26495
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  26447 cgagagattagtctccgcagttgcgcgcggaggatacccggtttacacc 26495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 29174 - 29130
Alignment:
Q  4 gggattagtctccgcagttgcgcgcggaggatacctgatttacac 48  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  29174 gggattagtctccacagttgcgcgcggaggatacccgatttacac 29130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37180026 - 37179978
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  37180026 cgagggattagtctacgcacttgcgcgcggaggatacccgatttacacc 37179978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42745141 - 42745095
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 47  Q
    ||||||||||||||| |||||||||||||||||||||| | ||||||    
T  42745141 cgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 5394515 - 5394560
Alignment:
Q  4 gggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||    
T  5394515 gggattagtctccgcagttgcacgcggaggatactcgatttacacc 5394560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17981613 - 17981650
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  17981613 cgagagattagtctccgcagttgcgcgcggaggatacc 17981650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17655777 - 17655824
Alignment:
Q  1 cgagggattagtctccgcagttgc--gcgcggaggatacctgatttac 46  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  17655777 cgagggattagtctccgcagttgcgtgcgaggaggatacctgatttac 17655824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25423860 - 25423904
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgattta 45  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||    
T  25423860 cgagggattagtctcagcagttgcgcgtggaggatacccgattta 25423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37092220 - 37092172
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 49  Q
    ||||||||||||||||||||||| || ||||||||||| | ||||||||    
T  37092220 cgagggattagtctccgcagttgtgcacggaggatacccggtttacacc 37092172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31579254 - 31579208
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 47  Q
    ||||| |||||| ||||||||||||||||||||||||| | ||||||    
T  31579254 cgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1682138 - 1682175
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||||||||||||||||||||||||| | |||||||||    
T  1682138 cgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14551590 - 14551626
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatac 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  14551590 cgagggattaatctccgcagttgcgcgcagaggatac 14551626  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 33757104 - 33757132
Alignment:
Q  21 ttgcgcgcggaggatacctgatttacacc 49  Q
    |||||||||||||||||||||||||||||    
T  33757104 ttgcgcgcggaggatacctgatttacacc 33757132  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27250 - 27213
Alignment:
Q  1 cgagggattagtctccgcagttgcgcgcggaggatacc 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  27250 cgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

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