View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9209_low_2 (Length: 824)
Name: NF9209_low_2
Description: NF9209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9209_low_2 |
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| [»] scaffold0217 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 23691373 - 23691948
Alignment:
| Q |
1 |
tcacccctttgaatgctaagcaaattactccgtcacagtgaaactagtctcccc-catctcctaaatatccaccctccacaccataccttgctgctaaaa |
99 |
Q |
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| T |
23691373 |
tcacccctttgaatgctaagcaaattactccatcacactgaagctagtctcccctcatctcctaaagatccaccctccgcaccataccttgctgctaaaa |
23691472 |
T |
|
| Q |
100 |
ctctataccacaaacannnnnnnnn-ctccctcaatctccaacaccatttgacaagtaaagatatattaaactccgtaattcttctgactactgaacatc |
198 |
Q |
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| T |
23691473 |
ctctataccacaaacagtttttttttctccctcaatctccaacaccatttgacaagtaaagatatattaaactccctaattcttctgacttctggacatc |
23691572 |
T |
|
| Q |
199 |
tatcctcctgtttgtgacaaatagtgtcccaacttatccatattaaactcccccaatctccaaccccaaagttacgaggaccaacacaaaacacaacaga |
298 |
Q |
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| T |
23691573 |
tatcctcctgtttgtgacaaataatgttccaatttatccatattaaactccctcaatctccaacaccaa-gttacgaggactaacacaaaacataacaga |
23691671 |
T |
|
| Q |
299 |
caaaaactcagcaagtgagtgtaaaaaatttgagggtggaataaatacaaattcttcatatttattagaagaaatataatagttagttagagtttggtgt |
398 |
Q |
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||||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23691672 |
caaaaactcagaaagtaagtgtaaaaaaattgaggttggaataaatacaaattcttcatatttattagaagaaatataatagttagatagagtttggtgt |
23691771 |
T |
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| Q |
399 |
atgtagttagtttgttaattaagaggttagtttgttaattctctactagctcaatataaccaatatccaatatgaattttaaggannnnnnnctttgtat |
498 |
Q |
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| T |
23691772 |
atgtacttagtttgttaattaagaggttagtttgttaattctctactagctctatataaccaatatccaatatgaattttaagga-ttttttctttgtat |
23691870 |
T |
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| Q |
499 |
caagctctcaagcttacttcttatatgagatgaatctttgcctatttgatcatgtggtttctaacaatatcaaacatt |
576 |
Q |
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| T |
23691871 |
caagctctcaagcttacttcttatatgagatgaatctttgcctatttgatcatgtggtttctaacaatatcaaacatt |
23691948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 612 - 809
Target Start/End: Original strand, 23691997 - 23692192
Alignment:
| Q |
612 |
ctttggtcccattaattgtttacctttgagttttcttgatggattaattgttagtatttttgaaataaaataaaataagctaagccatcatgaacaatag |
711 |
Q |
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| T |
23691997 |
ctttggtcccattaattgtttacctttgagttttcttgatggattaattattagtatttttgaaataaaataaaataagctaagccatcatgaacaatag |
23692096 |
T |
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| Q |
712 |
tagatcttaaggatgggagcataatatagagttgtacttgtatatgtgtaacataactacaaatttccaaaaatcaagagatatttgataaaatatta |
809 |
Q |
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| T |
23692097 |
tagatcttaaggatgggagcata--atagagttgtacttgtatatatgtaacataactacaaatttccaaaaatcaagagatatttgataaaatatta |
23692192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12249783 - 12249540
Alignment:
| Q |
1 |
tcacccctttgaatgctaagcaaattactccgtcacagtgaaactagtctccccc-atctcctaaatatccaccctccacaccataccttgctgctaaaa |
99 |
Q |
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| T |
12249783 |
tcacctctctgaacgctaagcaaattattccaccacactgaagctaatctccccccattgcctagagatccaccctctacaccataatgtgttgctaaaa |
12249684 |
T |
|
| Q |
100 |
ctctataccacaaacannnnnnnnnctccctcaatctccaacaccatttgacaagtaaagatatattaaactccgtaattcttctgactactgaacatct |
199 |
Q |
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| T |
12249683 |
ctctataccacagacaacctttttcctctctcaacctccaacaccatttgtcaagtaaagacaagttaaactccctaaccctcctgacccccatacctcc |
12249584 |
T |
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| Q |
200 |
atcctcctgtttgtgacaaatagtgtcccaacttatccatatta |
243 |
Q |
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| T |
12249583 |
atcatcctttttgagacaaatagtgtcccaattaatccaaatta |
12249540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 35563463 - 35563511
Alignment:
| Q |
125 |
ctccctcaatctccaacaccatttgacaagtaaagatatattaaactcc |
173 |
Q |
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| T |
35563463 |
ctccctcaacctccaacaccatttttcaagtaaagataaattaaactcc |
35563511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 23562 - 23609
Alignment:
| Q |
137 |
ccaacaccatttgacaagtaaagatatattaaactccgtaattcttct |
184 |
Q |
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| T |
23562 |
ccaacaccatttgccaattaaagataaattaaacttcgtaattcttct |
23609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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